Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00741 and SMc00740 are separated by 204 nucleotides SMc00740 and SMc00739 overlap by 1 nucleotides SMc00739 and SMc00759 are separated by 61 nucleotides SMc00759 and SMc00738 are separated by 318 nucleotides
SMc00741: SMc00741 - fatty-acid-CoA ligase, at 2,840,862 to 2,842,508
SMc00741
SMc00740: SMc00740 - hypothetical protein, at 2,842,713 to 2,842,997
SMc00740
SMc00739: SMc00739 - hypothetical protein, at 2,842,997 to 2,843,479
SMc00739
SMc00759: SMc00759 - tRNA-Leu, at 2,843,541 to 2,843,625
SMc00759
SMc00738: SMc00738 - hypothetical protein, at 2,843,944 to 2,844,453
SMc00738
Position (kb)
2842
2843 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2841.934 kb on + strand, within SMc00741 at 2841.935 kb on - strand, within SMc00741 at 2841.935 kb on - strand, within SMc00741 at 2842.055 kb on + strand, within SMc00741 at 2842.056 kb on - strand, within SMc00741 at 2842.210 kb on + strand, within SMc00741 at 2842.210 kb on + strand, within SMc00741 at 2842.211 kb on - strand, within SMc00741 at 2842.211 kb on - strand, within SMc00741 at 2842.340 kb on - strand, within SMc00741 at 2842.340 kb on - strand, within SMc00741 at 2842.474 kb on + strand at 2842.542 kb on + strand at 2842.543 kb on - strand at 2842.673 kb on + strand at 2842.682 kb on - strand at 2842.686 kb on + strand at 2842.687 kb on - strand at 2842.687 kb on - strand at 2842.687 kb on - strand at 2842.777 kb on + strand, within SMc00740 at 2842.777 kb on + strand, within SMc00740 at 2842.778 kb on - strand, within SMc00740 at 2842.778 kb on - strand, within SMc00740 at 2842.918 kb on - strand, within SMc00740 at 2842.918 kb on - strand, within SMc00740 at 2843.037 kb on + strand at 2843.126 kb on + strand, within SMc00739 at 2843.126 kb on + strand, within SMc00739 at 2843.126 kb on + strand, within SMc00739 at 2843.126 kb on + strand, within SMc00739 at 2843.126 kb on + strand, within SMc00739 at 2843.126 kb on + strand, within SMc00739 at 2843.127 kb on - strand, within SMc00739 at 2843.127 kb on - strand, within SMc00739 at 2843.132 kb on - strand, within SMc00739 at 2843.162 kb on + strand, within SMc00739 at 2843.163 kb on - strand, within SMc00739 at 2843.163 kb on - strand, within SMc00739 at 2843.264 kb on - strand, within SMc00739 at 2843.770 kb on + strand at 2843.771 kb on - strand at 2843.850 kb on + strand at 2843.871 kb on + strand at 2843.871 kb on + strand at 2843.871 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 2,841,934 + SMc00741 0.65 -0.6 2,841,935 - SMc00741 0.65 +0.1 2,841,935 - SMc00741 0.65 -0.5 2,842,055 + SMc00741 0.72 +1.2 2,842,056 - SMc00741 0.72 -0.1 2,842,210 + SMc00741 0.82 +0.8 2,842,210 + SMc00741 0.82 +0.6 2,842,211 - SMc00741 0.82 +0.1 2,842,211 - SMc00741 0.82 +0.4 2,842,340 - SMc00741 0.90 +1.0 2,842,340 - SMc00741 0.90 -0.2 2,842,474 + +0.4 2,842,542 + +0.2 2,842,543 - +0.2 2,842,673 + -0.6 2,842,682 - -0.3 2,842,686 + -0.5 2,842,687 - +2.0 2,842,687 - +0.5 2,842,687 - -2.3 2,842,777 + SMc00740 0.22 -1.4 2,842,777 + SMc00740 0.22 -0.0 2,842,778 - SMc00740 0.23 -0.2 2,842,778 - SMc00740 0.23 -2.1 2,842,918 - SMc00740 0.72 -1.6 2,842,918 - SMc00740 0.72 -0.9 2,843,037 + +1.2 2,843,126 + SMc00739 0.27 +0.2 2,843,126 + SMc00739 0.27 -0.0 2,843,126 + SMc00739 0.27 -0.1 2,843,126 + SMc00739 0.27 -0.6 2,843,126 + SMc00739 0.27 +1.1 2,843,126 + SMc00739 0.27 +0.6 2,843,127 - SMc00739 0.27 -0.9 2,843,127 - SMc00739 0.27 -2.2 2,843,132 - SMc00739 0.28 -0.7 2,843,162 + SMc00739 0.34 -0.4 2,843,163 - SMc00739 0.34 +0.3 2,843,163 - SMc00739 0.34 -0.4 2,843,264 - SMc00739 0.55 +0.6 2,843,770 + +0.2 2,843,771 - -0.1 2,843,850 + -2.0 2,843,871 + -1.5 2,843,871 + -0.3 2,843,871 + -0.9
Or see this region's nucleotide sequence