Strain Fitness in Sinorhizobium meliloti 1021 around SMc00740

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00741 and SMc00740 are separated by 204 nucleotidesSMc00740 and SMc00739 overlap by 1 nucleotidesSMc00739 and SMc00759 are separated by 61 nucleotidesSMc00759 and SMc00738 are separated by 318 nucleotides SMc00741: SMc00741 - fatty-acid-CoA ligase, at 2,840,862 to 2,842,508 SMc00741 SMc00740: SMc00740 - hypothetical protein, at 2,842,713 to 2,842,997 SMc00740 SMc00739: SMc00739 - hypothetical protein, at 2,842,997 to 2,843,479 SMc00739 SMc00759: SMc00759 - tRNA-Leu, at 2,843,541 to 2,843,625 SMc00759 SMc00738: SMc00738 - hypothetical protein, at 2,843,944 to 2,844,453 SMc00738 Position (kb) 2842 2843Strain fitness (log2 ratio) -2 -1 0 1 2at 2841.934 kb on + strand, within SMc00741at 2841.935 kb on - strand, within SMc00741at 2841.935 kb on - strand, within SMc00741at 2842.055 kb on + strand, within SMc00741at 2842.056 kb on - strand, within SMc00741at 2842.210 kb on + strand, within SMc00741at 2842.210 kb on + strand, within SMc00741at 2842.211 kb on - strand, within SMc00741at 2842.211 kb on - strand, within SMc00741at 2842.340 kb on - strand, within SMc00741at 2842.340 kb on - strand, within SMc00741at 2842.474 kb on + strandat 2842.542 kb on + strandat 2842.543 kb on - strandat 2842.673 kb on + strandat 2842.682 kb on - strandat 2842.686 kb on + strandat 2842.687 kb on - strandat 2842.687 kb on - strandat 2842.687 kb on - strandat 2842.777 kb on + strand, within SMc00740at 2842.777 kb on + strand, within SMc00740at 2842.778 kb on - strand, within SMc00740at 2842.778 kb on - strand, within SMc00740at 2842.918 kb on - strand, within SMc00740at 2842.918 kb on - strand, within SMc00740at 2843.037 kb on + strandat 2843.126 kb on + strand, within SMc00739at 2843.126 kb on + strand, within SMc00739at 2843.126 kb on + strand, within SMc00739at 2843.126 kb on + strand, within SMc00739at 2843.126 kb on + strand, within SMc00739at 2843.126 kb on + strand, within SMc00739at 2843.127 kb on - strand, within SMc00739at 2843.127 kb on - strand, within SMc00739at 2843.132 kb on - strand, within SMc00739at 2843.162 kb on + strand, within SMc00739at 2843.163 kb on - strand, within SMc00739at 2843.163 kb on - strand, within SMc00739at 2843.264 kb on - strand, within SMc00739at 2843.770 kb on + strandat 2843.771 kb on - strandat 2843.850 kb on + strandat 2843.871 kb on + strandat 2843.871 kb on + strandat 2843.871 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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2,841,934 + SMc00741 0.65 -0.6
2,841,935 - SMc00741 0.65 +0.1
2,841,935 - SMc00741 0.65 -0.5
2,842,055 + SMc00741 0.72 +1.2
2,842,056 - SMc00741 0.72 -0.1
2,842,210 + SMc00741 0.82 +0.8
2,842,210 + SMc00741 0.82 +0.6
2,842,211 - SMc00741 0.82 +0.1
2,842,211 - SMc00741 0.82 +0.4
2,842,340 - SMc00741 0.90 +1.0
2,842,340 - SMc00741 0.90 -0.2
2,842,474 + +0.4
2,842,542 + +0.2
2,842,543 - +0.2
2,842,673 + -0.6
2,842,682 - -0.3
2,842,686 + -0.5
2,842,687 - +2.0
2,842,687 - +0.5
2,842,687 - -2.3
2,842,777 + SMc00740 0.22 -1.4
2,842,777 + SMc00740 0.22 -0.0
2,842,778 - SMc00740 0.23 -0.2
2,842,778 - SMc00740 0.23 -2.1
2,842,918 - SMc00740 0.72 -1.6
2,842,918 - SMc00740 0.72 -0.9
2,843,037 + +1.2
2,843,126 + SMc00739 0.27 +0.2
2,843,126 + SMc00739 0.27 -0.0
2,843,126 + SMc00739 0.27 -0.1
2,843,126 + SMc00739 0.27 -0.6
2,843,126 + SMc00739 0.27 +1.1
2,843,126 + SMc00739 0.27 +0.6
2,843,127 - SMc00739 0.27 -0.9
2,843,127 - SMc00739 0.27 -2.2
2,843,132 - SMc00739 0.28 -0.7
2,843,162 + SMc00739 0.34 -0.4
2,843,163 - SMc00739 0.34 +0.3
2,843,163 - SMc00739 0.34 -0.4
2,843,264 - SMc00739 0.55 +0.6
2,843,770 + +0.2
2,843,771 - -0.1
2,843,850 + -2.0
2,843,871 + -1.5
2,843,871 + -0.3
2,843,871 + -0.9

Or see this region's nucleotide sequence