Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00344 and SMc00345 are separated by 179 nucleotides SMc00345 and SMc00346 are separated by 202 nucleotides SMc00346 and SMc00347 are separated by 93 nucleotides SMc00347 and SMc00348 are separated by 398 nucleotides
SMc00344: SMc00344 - hypothetical protein, at 301,029 to 301,319
SMc00344
SMc00345: SMc00345 - hypothetical protein, at 301,499 to 301,780
SMc00345
SMc00346: SMc00346 - hypothetical protein, at 301,983 to 302,435
SMc00346
SMc00347: SMc00347 - nucleoside diphosphate kinase regulator, at 302,529 to 302,936
SMc00347
SMc00348: SMc00348 - hypothetical protein, at 303,335 to 303,610
SMc00348
Position (kb) 301
302
303 Strain fitness (log2 ratio) -2
-1
0
1
2 at 301.044 kb on + strand at 301.044 kb on + strand at 301.045 kb on - strand at 301.045 kb on - strand at 301.045 kb on - strand at 301.077 kb on + strand at 301.195 kb on + strand, within SMc00344 at 301.196 kb on - strand, within SMc00344 at 301.265 kb on - strand, within SMc00344 at 301.316 kb on - strand at 301.316 kb on - strand at 301.500 kb on + strand at 301.570 kb on + strand, within SMc00345 at 301.570 kb on + strand, within SMc00345 at 301.571 kb on - strand, within SMc00345 at 301.571 kb on - strand, within SMc00345 at 301.679 kb on - strand, within SMc00345 at 301.749 kb on + strand, within SMc00345 at 301.750 kb on - strand, within SMc00345 at 302.057 kb on + strand at 302.173 kb on - strand, within SMc00346 at 302.173 kb on - strand, within SMc00346 at 302.227 kb on + strand, within SMc00346 at 302.227 kb on + strand, within SMc00346 at 302.228 kb on - strand, within SMc00346 at 302.228 kb on - strand, within SMc00346 at 302.298 kb on + strand, within SMc00346 at 302.564 kb on + strand at 302.564 kb on + strand at 302.565 kb on - strand at 302.565 kb on - strand at 302.571 kb on + strand, within SMc00347 at 302.572 kb on - strand, within SMc00347 at 302.755 kb on - strand, within SMc00347 at 302.942 kb on + strand at 302.942 kb on + strand at 302.943 kb on - strand at 302.943 kb on - strand at 303.000 kb on + strand at 303.001 kb on - strand at 303.046 kb on - strand at 303.049 kb on + strand at 303.049 kb on + strand at 303.137 kb on + strand at 303.137 kb on + strand at 303.336 kb on + strand at 303.336 kb on + strand at 303.337 kb on - strand at 303.337 kb on - strand at 303.337 kb on - strand at 303.337 kb on - strand at 303.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 301,044 + +0.1 301,044 + -0.8 301,045 - -1.3 301,045 - -0.8 301,045 - +1.0 301,077 + +0.9 301,195 + SMc00344 0.57 +0.5 301,196 - SMc00344 0.57 -0.1 301,265 - SMc00344 0.81 -0.8 301,316 - +0.1 301,316 - -0.3 301,500 + -0.9 301,570 + SMc00345 0.25 -0.9 301,570 + SMc00345 0.25 +0.1 301,571 - SMc00345 0.26 +0.3 301,571 - SMc00345 0.26 +0.4 301,679 - SMc00345 0.64 +0.7 301,749 + SMc00345 0.89 -0.6 301,750 - SMc00345 0.89 +0.5 302,057 + +0.9 302,173 - SMc00346 0.42 -0.9 302,173 - SMc00346 0.42 -0.7 302,227 + SMc00346 0.54 -1.7 302,227 + SMc00346 0.54 -0.4 302,228 - SMc00346 0.54 -1.1 302,228 - SMc00346 0.54 -1.9 302,298 + SMc00346 0.70 +0.2 302,564 + -0.3 302,564 + +1.0 302,565 - -2.0 302,565 - +1.4 302,571 + SMc00347 0.10 -0.4 302,572 - SMc00347 0.11 -0.6 302,755 - SMc00347 0.55 -1.2 302,942 + +0.0 302,942 + +0.7 302,943 - -0.2 302,943 - +0.3 303,000 + -0.9 303,001 - +1.8 303,046 - +0.8 303,049 + -0.1 303,049 + -1.1 303,137 + +0.7 303,137 + +0.4 303,336 + +0.4 303,336 + -2.0 303,337 - +0.5 303,337 - +0.6 303,337 - +0.7 303,337 - -1.0 303,337 - -1.2
Or see this region's nucleotide sequence