Strain Fitness in Sinorhizobium meliloti 1021 around SMc00068

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00960 and SMc00068 are separated by 141 nucleotidesSMc00068 and SMc00001 are separated by 210 nucleotides SMc00960: SMc00960 - hypothetical protein, at 979,731 to 981,146 SMc00960 SMc00068: SMc00068 - hypothetical protein, at 981,288 to 982,517 SMc00068 SMc00001: SMc00001 - hypothetical protein, at 982,728 to 983,786 SMc00001 Position (kb) 981 982 983Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 980.350 kb on + strand, within SMc00960at 980.656 kb on - strand, within SMc00960at 980.692 kb on - strand, within SMc00960at 980.692 kb on - strand, within SMc00960at 980.693 kb on + strand, within SMc00960at 980.693 kb on + strand, within SMc00960at 980.694 kb on - strand, within SMc00960at 980.694 kb on - strand, within SMc00960at 980.720 kb on - strand, within SMc00960at 980.720 kb on - strand, within SMc00960at 980.760 kb on + strand, within SMc00960at 980.760 kb on + strand, within SMc00960at 980.796 kb on + strand, within SMc00960at 980.796 kb on + strand, within SMc00960at 980.796 kb on + strand, within SMc00960at 980.797 kb on - strand, within SMc00960at 980.797 kb on - strand, within SMc00960at 980.797 kb on - strandat 980.797 kb on - strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.856 kb on + strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 980.857 kb on - strand, within SMc00960at 981.319 kb on + strandat 981.320 kb on - strandat 981.387 kb on + strandat 981.388 kb on - strandat 981.394 kb on + strandat 981.395 kb on - strandat 981.548 kb on + strand, within SMc00068at 981.643 kb on + strand, within SMc00068at 981.644 kb on - strand, within SMc00068at 981.884 kb on + strand, within SMc00068at 981.885 kb on - strand, within SMc00068at 981.901 kb on + strand, within SMc00068at 981.976 kb on + strand, within SMc00068at 981.988 kb on + strand, within SMc00068at 981.988 kb on + strand, within SMc00068at 981.989 kb on - strand, within SMc00068at 982.204 kb on + strand, within SMc00068at 982.204 kb on + strandat 982.205 kb on - strand, within SMc00068at 982.342 kb on + strand, within SMc00068at 982.343 kb on - strand, within SMc00068at 982.343 kb on - strand, within SMc00068at 982.343 kb on - strand, within SMc00068at 982.343 kb on - strand, within SMc00068at 982.343 kb on - strand, within SMc00068at 982.343 kb on - strand, within SMc00068at 982.497 kb on - strandat 982.587 kb on - strandat 982.668 kb on - strandat 983.058 kb on + strand, within SMc00001at 983.066 kb on + strand, within SMc00001at 983.137 kb on - strand, within SMc00001at 983.236 kb on + strand, within SMc00001at 983.237 kb on - strand, within SMc00001at 983.290 kb on - strand, within SMc00001at 983.333 kb on + strand, within SMc00001at 983.334 kb on - strand, within SMc00001

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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980,350 + SMc00960 0.44 +0.3
980,656 - SMc00960 0.65 +0.0
980,692 - SMc00960 0.68 +0.1
980,692 - SMc00960 0.68 +0.5
980,693 + SMc00960 0.68 -0.5
980,693 + SMc00960 0.68 -1.3
980,694 - SMc00960 0.68 -0.0
980,694 - SMc00960 0.68 +0.0
980,720 - SMc00960 0.70 +1.1
980,720 - SMc00960 0.70 +1.6
980,760 + SMc00960 0.73 +0.1
980,760 + SMc00960 0.73 +0.7
980,796 + SMc00960 0.75 +0.5
980,796 + SMc00960 0.75 -0.7
980,796 + SMc00960 0.75 -0.6
980,797 - SMc00960 0.75 -1.2
980,797 - SMc00960 0.75 +0.1
980,797 - +4.7
980,797 - SMc00960 0.75 -0.1
980,856 + SMc00960 0.79 +0.5
980,856 + SMc00960 0.79 -1.1
980,856 + SMc00960 0.79 -1.7
980,856 + SMc00960 0.79 -0.2
980,856 + SMc00960 0.79 -0.2
980,856 + SMc00960 0.79 +1.3
980,856 + SMc00960 0.79 -0.3
980,856 + SMc00960 0.79 +1.3
980,857 - SMc00960 0.80 +0.4
980,857 - SMc00960 0.80 +0.1
980,857 - SMc00960 0.80 -0.3
980,857 - SMc00960 0.80 -0.6
980,857 - SMc00960 0.80 +0.4
980,857 - SMc00960 0.80 +0.3
980,857 - SMc00960 0.80 +0.5
981,319 + -0.6
981,320 - +0.7
981,387 + -0.5
981,388 - -0.8
981,394 + -0.6
981,395 - +0.9
981,548 + SMc00068 0.21 -0.6
981,643 + SMc00068 0.29 -0.3
981,644 - SMc00068 0.29 -1.3
981,884 + SMc00068 0.48 -0.1
981,885 - SMc00068 0.49 -1.0
981,901 + SMc00068 0.50 -1.5
981,976 + SMc00068 0.56 -0.7
981,988 + SMc00068 0.57 -1.4
981,988 + SMc00068 0.57 -0.0
981,989 - SMc00068 0.57 +0.4
982,204 + SMc00068 0.74 -1.5
982,204 + +2.7
982,205 - SMc00068 0.75 -1.8
982,342 + SMc00068 0.86 -0.3
982,343 - SMc00068 0.86 +0.3
982,343 - SMc00068 0.86 +0.3
982,343 - SMc00068 0.86 -0.6
982,343 - SMc00068 0.86 +0.2
982,343 - SMc00068 0.86 -0.2
982,343 - SMc00068 0.86 +2.4
982,497 - +0.6
982,587 - +1.0
982,668 - +1.0
983,058 + SMc00001 0.31 +0.3
983,066 + SMc00001 0.32 -0.0
983,137 - SMc00001 0.39 -1.0
983,236 + SMc00001 0.48 +0.1
983,237 - SMc00001 0.48 +0.1
983,290 - SMc00001 0.53 -1.7
983,333 + SMc00001 0.57 +0.4
983,334 - SMc00001 0.57 -0.1

Or see this region's nucleotide sequence