Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1519 and SMa1521 are separated by 43 nucleotides SMa1521 and SMa1523 are separated by 87 nucleotides SMa1523 and SMa1525 are separated by 29 nucleotides
SMa1519: SMa1519 - NADH:ubiquinone oxidoreductase subunit 6 (chain I), at 837,551 to 838,117
SMa1519
SMa1521: SMa1521 - hypothetical protein, at 838,161 to 838,601
SMa1521
SMa1523: SMa1523 - NuoG2 NADH I chain G 2, at 838,689 to 841,250
SMa1523
SMa1525: SMa1525 - NuoF2 NADH I chain F, at 841,280 to 842,545
SMa1525
Position (kb) 838
839
840
841
842 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 837.695 kb on + strand, within SMa1519 at 837.695 kb on + strand, within SMa1519 at 837.813 kb on - strand, within SMa1519 at 837.932 kb on + strand, within SMa1519 at 837.933 kb on - strand, within SMa1519 at 838.086 kb on - strand at 838.333 kb on - strand, within SMa1521 at 838.471 kb on + strand, within SMa1521 at 838.471 kb on + strand, within SMa1521 at 838.471 kb on + strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.474 kb on + strand, within SMa1521 at 838.475 kb on - strand, within SMa1521 at 838.576 kb on - strand at 838.593 kb on + strand at 838.659 kb on + strand at 838.659 kb on + strand at 838.659 kb on + strand at 838.659 kb on + strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.661 kb on + strand at 838.661 kb on + strand at 838.662 kb on - strand at 838.759 kb on + strand at 838.801 kb on + strand at 838.997 kb on - strand, within SMa1523 at 839.152 kb on + strand, within SMa1523 at 839.153 kb on - strand, within SMa1523 at 839.235 kb on - strand, within SMa1523 at 839.466 kb on + strand, within SMa1523 at 839.466 kb on + strand, within SMa1523 at 839.467 kb on - strand, within SMa1523 at 839.491 kb on + strand, within SMa1523 at 839.492 kb on - strand, within SMa1523 at 839.492 kb on - strand at 839.781 kb on - strand, within SMa1523 at 839.899 kb on - strand, within SMa1523 at 840.082 kb on + strand, within SMa1523 at 840.125 kb on + strand, within SMa1523 at 840.187 kb on - strand, within SMa1523 at 840.239 kb on + strand, within SMa1523 at 840.280 kb on + strand, within SMa1523 at 840.280 kb on + strand, within SMa1523 at 840.622 kb on + strand, within SMa1523 at 840.623 kb on - strand, within SMa1523 at 840.750 kb on + strand, within SMa1523 at 840.750 kb on + strand, within SMa1523 at 840.750 kb on + strand, within SMa1523 at 841.026 kb on - strand at 841.044 kb on - strand at 841.251 kb on - strand at 841.251 kb on - strand at 841.251 kb on - strand at 841.769 kb on + strand, within SMa1525 at 841.770 kb on - strand, within SMa1525 at 841.788 kb on + strand, within SMa1525 at 841.788 kb on + strand, within SMa1525 at 841.824 kb on + strand, within SMa1525 at 841.856 kb on + strand, within SMa1525 at 841.856 kb on + strand, within SMa1525 at 841.891 kb on + strand, within SMa1525 at 842.038 kb on + strand, within SMa1525 at 842.038 kb on + strand, within SMa1525 at 842.039 kb on - strand, within SMa1525 at 842.040 kb on + strand, within SMa1525 at 842.041 kb on - strand, within SMa1525 at 842.041 kb on - strand, within SMa1525 at 842.153 kb on + strand, within SMa1525 at 842.166 kb on + strand, within SMa1525 at 842.167 kb on - strand, within SMa1525 at 842.167 kb on - strand, within SMa1525 at 842.182 kb on - strand, within SMa1525 at 842.182 kb on - strand, within SMa1525 at 842.187 kb on + strand, within SMa1525 at 842.188 kb on - strand, within SMa1525 at 842.188 kb on - strand, within SMa1525 at 842.188 kb on - strand, within SMa1525 at 842.188 kb on - strand, within SMa1525 at 842.211 kb on + strand, within SMa1525 at 842.211 kb on + strand, within SMa1525
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 837,695 + SMa1519 0.25 +0.1 837,695 + SMa1519 0.25 -1.2 837,813 - SMa1519 0.46 -0.0 837,932 + SMa1519 0.67 -0.9 837,933 - SMa1519 0.67 -0.4 838,086 - -0.6 838,333 - SMa1521 0.39 +0.4 838,471 + SMa1521 0.70 +0.9 838,471 + SMa1521 0.70 -3.0 838,471 + SMa1521 0.70 -1.5 838,472 - SMa1521 0.71 -2.4 838,472 - SMa1521 0.71 +0.9 838,472 - SMa1521 0.71 -0.2 838,472 - SMa1521 0.71 -0.1 838,472 - SMa1521 0.71 -0.5 838,474 + SMa1521 0.71 +0.1 838,475 - SMa1521 0.71 -1.0 838,576 - +0.2 838,593 + +0.3 838,659 + +0.6 838,659 + -0.2 838,659 + -0.2 838,659 + +0.8 838,660 - +0.1 838,660 - +0.4 838,660 - +0.0 838,660 - +0.6 838,660 - -0.0 838,660 - +0.1 838,660 - +1.4 838,660 - -0.8 838,661 + -0.5 838,661 + -1.5 838,662 - +0.9 838,759 + +0.2 838,801 + -0.7 838,997 - SMa1523 0.12 -0.5 839,152 + SMa1523 0.18 -1.5 839,153 - SMa1523 0.18 -0.3 839,235 - SMa1523 0.21 -2.3 839,466 + SMa1523 0.30 -0.2 839,466 + SMa1523 0.30 -0.1 839,467 - SMa1523 0.30 +0.0 839,491 + SMa1523 0.31 -0.5 839,492 - SMa1523 0.31 -0.1 839,492 - +0.8 839,781 - SMa1523 0.43 +0.5 839,899 - SMa1523 0.47 +0.1 840,082 + SMa1523 0.54 +0.0 840,125 + SMa1523 0.56 -0.3 840,187 - SMa1523 0.58 -0.3 840,239 + SMa1523 0.60 -1.3 840,280 + SMa1523 0.62 -2.4 840,280 + SMa1523 0.62 +0.9 840,622 + SMa1523 0.75 -1.1 840,623 - SMa1523 0.75 +1.0 840,750 + SMa1523 0.80 -0.9 840,750 + SMa1523 0.80 +0.8 840,750 + SMa1523 0.80 +0.3 841,026 - -0.2 841,044 - +0.2 841,251 - +0.3 841,251 - +1.1 841,251 - +0.4 841,769 + SMa1525 0.39 -1.0 841,770 - SMa1525 0.39 +0.3 841,788 + SMa1525 0.40 -1.7 841,788 + SMa1525 0.40 +0.2 841,824 + SMa1525 0.43 +0.2 841,856 + SMa1525 0.45 +0.4 841,856 + SMa1525 0.45 +0.9 841,891 + SMa1525 0.48 -0.7 842,038 + SMa1525 0.60 +1.8 842,038 + SMa1525 0.60 +0.6 842,039 - SMa1525 0.60 +0.0 842,040 + SMa1525 0.60 -0.2 842,041 - SMa1525 0.60 -0.5 842,041 - SMa1525 0.60 -1.2 842,153 + SMa1525 0.69 +0.0 842,166 + SMa1525 0.70 +0.5 842,167 - SMa1525 0.70 -1.2 842,167 - SMa1525 0.70 -1.2 842,182 - SMa1525 0.71 -0.0 842,182 - SMa1525 0.71 +1.7 842,187 + SMa1525 0.72 -1.2 842,188 - SMa1525 0.72 +0.7 842,188 - SMa1525 0.72 -0.0 842,188 - SMa1525 0.72 -1.5 842,188 - SMa1525 0.72 +0.8 842,211 + SMa1525 0.74 +2.0 842,211 + SMa1525 0.74 +2.5
Or see this region's nucleotide sequence