Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1363 and SMa1364 are separated by 63 nucleotides SMa1364 and SMa5008 are separated by 269 nucleotides SMa5008 and SMa1365 are separated by 192 nucleotides
SMa1363: SMa1363 - ABC transporter permease, at 747,596 to 748,684
SMa1363
SMa1364: SMa1364 - ABC transporter substrate-binding protein, at 748,748 to 749,968
SMa1364
SMa5008: SMa5008 - hypothetical protein, at 750,238 to 750,459
SMa5008
SMa1365: SMa1365 - ATP-binding protein, at 750,652 to 751,026
SMa1365
Position (kb) 748
749
750 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 747.779 kb on + strand, within SMa1363 at 747.806 kb on + strand, within SMa1363 at 747.807 kb on - strand, within SMa1363 at 747.807 kb on - strand, within SMa1363 at 747.869 kb on + strand, within SMa1363 at 747.869 kb on + strand, within SMa1363 at 747.869 kb on + strand, within SMa1363 at 747.869 kb on + strand, within SMa1363 at 747.869 kb on + strand, within SMa1363 at 747.870 kb on - strand, within SMa1363 at 747.921 kb on + strand, within SMa1363 at 747.922 kb on - strand, within SMa1363 at 747.924 kb on - strand, within SMa1363 at 747.998 kb on + strand, within SMa1363 at 748.052 kb on + strand, within SMa1363 at 748.072 kb on + strand, within SMa1363 at 748.072 kb on + strand, within SMa1363 at 748.072 kb on + strand, within SMa1363 at 748.072 kb on + strand, within SMa1363 at 748.072 kb on + strand, within SMa1363 at 748.183 kb on - strand, within SMa1363 at 748.183 kb on - strand, within SMa1363 at 748.522 kb on - strand, within SMa1363 at 748.733 kb on + strand at 748.891 kb on + strand, within SMa1364 at 748.891 kb on + strand, within SMa1364 at 748.892 kb on - strand, within SMa1364 at 748.981 kb on + strand, within SMa1364 at 748.982 kb on - strand, within SMa1364 at 749.038 kb on + strand, within SMa1364 at 749.038 kb on + strand, within SMa1364 at 749.039 kb on - strand, within SMa1364 at 749.039 kb on - strand, within SMa1364 at 749.042 kb on + strand, within SMa1364 at 749.043 kb on - strand, within SMa1364 at 749.072 kb on - strand, within SMa1364 at 749.228 kb on + strand, within SMa1364 at 749.322 kb on + strand, within SMa1364 at 749.322 kb on + strand, within SMa1364 at 749.350 kb on + strand, within SMa1364 at 749.357 kb on + strand, within SMa1364 at 749.424 kb on + strand, within SMa1364 at 749.424 kb on + strand, within SMa1364 at 749.575 kb on + strand, within SMa1364 at 749.575 kb on + strand, within SMa1364 at 749.598 kb on + strand, within SMa1364 at 749.784 kb on - strand, within SMa1364 at 749.793 kb on + strand, within SMa1364 at 749.799 kb on - strand, within SMa1364 at 750.038 kb on + strand at 750.042 kb on + strand at 750.042 kb on + strand at 750.042 kb on + strand at 750.042 kb on + strand at 750.043 kb on - strand at 750.043 kb on - strand at 750.043 kb on - strand at 750.043 kb on - strand at 750.043 kb on - strand at 750.043 kb on - strand at 750.078 kb on + strand at 750.099 kb on + strand at 750.100 kb on - strand at 750.108 kb on - strand at 750.110 kb on - strand at 750.220 kb on + strand at 750.240 kb on - strand at 750.280 kb on + strand, within SMa5008 at 750.281 kb on - strand, within SMa5008 at 750.281 kb on - strand, within SMa5008 at 750.281 kb on - strand, within SMa5008 at 750.281 kb on - strand, within SMa5008 at 750.303 kb on + strand, within SMa5008 at 750.303 kb on + strand, within SMa5008 at 750.304 kb on - strand, within SMa5008 at 750.320 kb on + strand, within SMa5008 at 750.332 kb on + strand, within SMa5008 at 750.333 kb on - strand, within SMa5008 at 750.333 kb on - strand, within SMa5008 at 750.451 kb on + strand at 750.452 kb on - strand at 750.478 kb on - strand at 750.541 kb on - strand at 750.868 kb on + strand, within SMa1365 at 750.868 kb on + strand, within SMa1365 at 750.953 kb on - strand, within SMa1365
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 747,779 + SMa1363 0.17 +0.1 747,806 + SMa1363 0.19 -1.6 747,807 - SMa1363 0.19 +0.1 747,807 - SMa1363 0.19 +0.3 747,869 + SMa1363 0.25 +0.8 747,869 + SMa1363 0.25 -0.2 747,869 + SMa1363 0.25 -1.9 747,869 + SMa1363 0.25 -0.2 747,869 + SMa1363 0.25 +0.3 747,870 - SMa1363 0.25 -0.1 747,921 + SMa1363 0.30 -0.2 747,922 - SMa1363 0.30 +3.3 747,924 - SMa1363 0.30 -1.4 747,998 + SMa1363 0.37 -0.6 748,052 + SMa1363 0.42 +1.3 748,072 + SMa1363 0.44 +1.1 748,072 + SMa1363 0.44 -0.5 748,072 + SMa1363 0.44 -0.8 748,072 + SMa1363 0.44 +0.8 748,072 + SMa1363 0.44 -0.7 748,183 - SMa1363 0.54 -0.5 748,183 - SMa1363 0.54 +0.5 748,522 - SMa1363 0.85 -0.2 748,733 + -0.6 748,891 + SMa1364 0.12 +0.2 748,891 + SMa1364 0.12 +0.5 748,892 - SMa1364 0.12 +0.4 748,981 + SMa1364 0.19 -0.1 748,982 - SMa1364 0.19 +0.0 749,038 + SMa1364 0.24 -0.6 749,038 + SMa1364 0.24 +0.0 749,039 - SMa1364 0.24 -0.5 749,039 - SMa1364 0.24 -0.7 749,042 + SMa1364 0.24 +0.2 749,043 - SMa1364 0.24 -0.4 749,072 - SMa1364 0.27 -0.4 749,228 + SMa1364 0.39 -1.2 749,322 + SMa1364 0.47 -0.7 749,322 + SMa1364 0.47 -0.5 749,350 + SMa1364 0.49 -0.5 749,357 + SMa1364 0.50 +0.2 749,424 + SMa1364 0.55 -0.4 749,424 + SMa1364 0.55 +0.1 749,575 + SMa1364 0.68 -2.5 749,575 + SMa1364 0.68 -0.1 749,598 + SMa1364 0.70 -0.4 749,784 - SMa1364 0.85 +0.8 749,793 + SMa1364 0.86 -0.9 749,799 - SMa1364 0.86 -1.1 750,038 + +0.2 750,042 + +0.2 750,042 + +1.8 750,042 + +0.1 750,042 + +0.3 750,043 - -0.1 750,043 - -0.4 750,043 - +0.2 750,043 - -0.7 750,043 - -0.3 750,043 - -1.2 750,078 + +0.9 750,099 + +0.4 750,100 - -0.2 750,108 - +0.4 750,110 - -0.6 750,220 + -0.1 750,240 - +0.4 750,280 + SMa5008 0.19 -0.2 750,281 - SMa5008 0.19 -1.3 750,281 - SMa5008 0.19 -0.4 750,281 - SMa5008 0.19 +0.1 750,281 - SMa5008 0.19 -0.1 750,303 + SMa5008 0.29 +0.2 750,303 + SMa5008 0.29 -0.2 750,304 - SMa5008 0.30 +1.1 750,320 + SMa5008 0.37 -0.6 750,332 + SMa5008 0.42 -0.4 750,333 - SMa5008 0.43 -0.4 750,333 - SMa5008 0.43 +2.8 750,451 + +0.3 750,452 - -0.2 750,478 - +0.2 750,541 - -1.6 750,868 + SMa1365 0.58 -1.2 750,868 + SMa1365 0.58 +1.1 750,953 - SMa1365 0.80 -1.2
Or see this region's nucleotide sequence