Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1050 and SMa1052 overlap by 4 nucleotides SMa1052 and SMa1053 overlap by 4 nucleotides SMa1053 and SMa1056 overlap by 4 nucleotides SMa1056 and SMa1057 overlap by 10 nucleotides
SMa1050: SMa1050 - hypothetical protein, at 576,097 to 576,642
SMa1050
SMa1052: SMa1052 - hypothetical protein, at 576,639 to 577,070
SMa1052
SMa1053: SMa1053 - hypothetical protein, at 577,067 to 577,477
SMa1053
SMa1056: SMa1056 - transcriptional regulator, at 577,474 to 577,821
SMa1056
SMa1057: SMa1057 - hypothetical protein, at 577,812 to 579,110
SMa1057
Position (kb) 577
578 Strain fitness (log2 ratio) -2
-1
0
1
2 at 576.537 kb on - strand, within SMa1050 at 576.702 kb on + strand, within SMa1052 at 577.317 kb on - strand, within SMa1053 at 577.387 kb on + strand, within SMa1053 at 577.636 kb on + strand, within SMa1056 at 577.637 kb on - strand, within SMa1056 at 577.833 kb on + strand at 577.834 kb on - strand at 578.252 kb on + strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.297 kb on + strand, within SMa1057 at 578.363 kb on + strand, within SMa1057 at 578.412 kb on - strand, within SMa1057 at 578.412 kb on - strand, within SMa1057 at 578.443 kb on + strand, within SMa1057 at 578.521 kb on + strand, within SMa1057 at 578.522 kb on - strand at 578.522 kb on - strand, within SMa1057 at 578.632 kb on + strand, within SMa1057 at 578.632 kb on + strand, within SMa1057 at 578.633 kb on - strand, within SMa1057 at 578.633 kb on - strand, within SMa1057 at 578.800 kb on + strand, within SMa1057 at 578.801 kb on - strand, within SMa1057
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 576,537 - SMa1050 0.81 -0.2 576,702 + SMa1052 0.15 +0.0 577,317 - SMa1053 0.61 +0.8 577,387 + SMa1053 0.78 -2.7 577,636 + SMa1056 0.47 +1.7 577,637 - SMa1056 0.47 -1.2 577,833 + +0.0 577,834 - -1.3 578,252 + SMa1057 0.34 +0.9 578,253 - SMa1057 0.34 -0.2 578,253 - SMa1057 0.34 +0.1 578,253 - SMa1057 0.34 +0.7 578,253 - SMa1057 0.34 -0.2 578,253 - SMa1057 0.34 +1.6 578,253 - SMa1057 0.34 +0.1 578,297 + SMa1057 0.37 +0.5 578,363 + SMa1057 0.42 -0.3 578,412 - SMa1057 0.46 +0.0 578,412 - SMa1057 0.46 +0.1 578,443 + SMa1057 0.49 +1.2 578,521 + SMa1057 0.55 +0.5 578,522 - +2.2 578,522 - SMa1057 0.55 -0.4 578,632 + SMa1057 0.63 -0.6 578,632 + SMa1057 0.63 -0.0 578,633 - SMa1057 0.63 -0.5 578,633 - SMa1057 0.63 -0.3 578,800 + SMa1057 0.76 +1.0 578,801 - SMa1057 0.76 +0.0
Or see this region's nucleotide sequence