Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0947 and SMa0950 are separated by 317 nucleotides SMa0950 and SMa0951 are separated by 30 nucleotides SMa0951 and SMa0952 overlap by 11 nucleotides
SMa0947: SMa0947 - hypothetical protein, at 529,150 to 529,464
SMa0947
SMa0950: SMa0950 - ABC transporter substrate-binding protein, at 529,782 to 530,855
SMa0950
SMa0951: SMa0951 - ABC transporter permease, at 530,886 to 531,749
SMa0951
SMa0952: SMa0952 - ABC transporter permease, at 531,739 to 532,629
SMa0952
Position (kb) 529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 528.847 kb on + strand at 528.847 kb on + strand at 528.848 kb on - strand at 529.029 kb on + strand at 529.101 kb on + strand at 529.272 kb on + strand, within SMa0947 at 529.431 kb on + strand, within SMa0947 at 529.701 kb on + strand at 529.702 kb on - strand at 529.702 kb on - strand at 529.702 kb on - strand at 529.721 kb on - strand at 529.721 kb on - strand at 529.861 kb on + strand at 529.943 kb on + strand, within SMa0950 at 529.944 kb on - strand, within SMa0950 at 530.081 kb on - strand, within SMa0950 at 530.081 kb on - strand, within SMa0950 at 530.081 kb on - strand, within SMa0950 at 530.162 kb on + strand, within SMa0950 at 530.375 kb on + strand, within SMa0950 at 530.423 kb on - strand, within SMa0950 at 530.581 kb on + strand, within SMa0950 at 530.582 kb on - strand, within SMa0950 at 530.752 kb on - strand at 530.887 kb on + strand at 530.900 kb on + strand at 530.900 kb on + strand at 530.927 kb on + strand at 530.982 kb on + strand, within SMa0951 at 531.046 kb on - strand, within SMa0951 at 531.079 kb on - strand, within SMa0951 at 531.155 kb on + strand, within SMa0951 at 531.236 kb on - strand, within SMa0951 at 531.236 kb on - strand, within SMa0951 at 531.277 kb on + strand, within SMa0951 at 531.309 kb on + strand, within SMa0951 at 531.309 kb on + strand, within SMa0951 at 531.310 kb on - strand, within SMa0951 at 531.313 kb on + strand, within SMa0951 at 531.342 kb on + strand, within SMa0951 at 531.372 kb on + strand, within SMa0951 at 531.373 kb on - strand, within SMa0951 at 531.402 kb on + strand, within SMa0951 at 531.518 kb on + strand, within SMa0951 at 531.518 kb on + strand, within SMa0951 at 531.519 kb on - strand, within SMa0951 at 531.519 kb on - strand, within SMa0951 at 531.519 kb on - strand, within SMa0951 at 531.519 kb on - strand, within SMa0951 at 531.521 kb on - strand, within SMa0951 at 531.521 kb on - strand, within SMa0951 at 531.521 kb on - strand, within SMa0951 at 531.585 kb on + strand, within SMa0951 at 531.698 kb on + strand at 531.743 kb on + strand at 531.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 528,847 + -0.2 528,847 + +0.2 528,848 - +1.2 529,029 + -1.1 529,101 + -0.2 529,272 + SMa0947 0.39 +0.4 529,431 + SMa0947 0.89 +0.0 529,701 + -0.0 529,702 - +0.2 529,702 - +0.3 529,702 - +0.4 529,721 - +2.2 529,721 - -0.2 529,861 + -0.2 529,943 + SMa0950 0.15 -3.5 529,944 - SMa0950 0.15 -0.9 530,081 - SMa0950 0.28 -0.3 530,081 - SMa0950 0.28 -0.7 530,081 - SMa0950 0.28 +0.0 530,162 + SMa0950 0.35 +0.2 530,375 + SMa0950 0.55 +0.0 530,423 - SMa0950 0.60 +0.3 530,581 + SMa0950 0.74 -0.4 530,582 - SMa0950 0.74 -1.2 530,752 - -1.2 530,887 + -1.0 530,900 + +0.5 530,900 + +0.0 530,927 + -0.3 530,982 + SMa0951 0.11 -0.5 531,046 - SMa0951 0.19 +0.1 531,079 - SMa0951 0.22 -0.0 531,155 + SMa0951 0.31 -1.1 531,236 - SMa0951 0.41 +0.5 531,236 - SMa0951 0.41 -0.1 531,277 + SMa0951 0.45 -1.3 531,309 + SMa0951 0.49 +0.0 531,309 + SMa0951 0.49 -0.8 531,310 - SMa0951 0.49 +0.6 531,313 + SMa0951 0.49 +2.1 531,342 + SMa0951 0.53 +0.9 531,372 + SMa0951 0.56 -2.7 531,373 - SMa0951 0.56 +1.2 531,402 + SMa0951 0.60 +0.3 531,518 + SMa0951 0.73 +0.2 531,518 + SMa0951 0.73 -2.2 531,519 - SMa0951 0.73 +0.6 531,519 - SMa0951 0.73 -1.5 531,519 - SMa0951 0.73 -0.8 531,519 - SMa0951 0.73 +0.0 531,521 - SMa0951 0.73 +1.8 531,521 - SMa0951 0.73 +0.9 531,521 - SMa0951 0.73 -0.8 531,585 + SMa0951 0.81 -1.1 531,698 + +0.9 531,743 + +0.3 531,744 - +0.6
Or see this region's nucleotide sequence