Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0887 and SMa0888 are separated by 61 nucleotides SMa0888 and SMa0890 overlap by 47 nucleotides SMa0890 and SMa0892 overlap by 1 nucleotides
SMa0887: SMa0887 - hypothetical protein, at 494,568 to 495,134
SMa0887
SMa0888: SMa0888 - hypothetical protein, at 495,196 to 496,014
SMa0888
SMa0890: SMa0890 - hypothetical protein, at 495,968 to 497,392
SMa0890
SMa0892: SMa0892 - DnaE3 DNA polymerase III alpha chain, at 497,392 to 500,655
SMa0892
Position (kb) 495
496
497
498 Strain fitness (log2 ratio) -1
0
1
2
3 at 495.152 kb on - strand at 495.152 kb on - strand at 495.293 kb on + strand, within SMa0888 at 495.436 kb on - strand, within SMa0888 at 495.538 kb on + strand, within SMa0888 at 495.538 kb on + strand, within SMa0888 at 495.538 kb on + strand, within SMa0888 at 495.538 kb on + strand, within SMa0888 at 495.539 kb on - strand, within SMa0888 at 495.540 kb on + strand, within SMa0888 at 495.540 kb on + strand, within SMa0888 at 495.891 kb on + strand, within SMa0888 at 495.891 kb on + strand, within SMa0888 at 495.891 kb on + strand, within SMa0888 at 495.892 kb on - strand, within SMa0888 at 495.892 kb on - strand, within SMa0888 at 495.892 kb on - strand, within SMa0888 at 495.892 kb on - strand, within SMa0888 at 496.161 kb on - strand, within SMa0890 at 496.161 kb on - strand, within SMa0890 at 496.313 kb on - strand, within SMa0890 at 496.465 kb on + strand, within SMa0890 at 496.465 kb on + strand, within SMa0890 at 496.561 kb on + strand, within SMa0890 at 496.561 kb on + strand, within SMa0890 at 496.575 kb on + strand, within SMa0890 at 496.576 kb on - strand, within SMa0890 at 496.659 kb on - strand, within SMa0890 at 496.659 kb on - strand, within SMa0890 at 496.659 kb on - strand, within SMa0890 at 496.751 kb on - strand, within SMa0890 at 496.996 kb on - strand, within SMa0890 at 497.035 kb on + strand, within SMa0890 at 497.035 kb on + strand, within SMa0890 at 497.036 kb on - strand, within SMa0890 at 497.036 kb on - strand, within SMa0890 at 497.280 kb on - strand at 497.280 kb on - strand at 497.362 kb on + strand at 497.363 kb on - strand at 497.363 kb on - strand at 497.623 kb on + strand at 497.644 kb on + strand at 497.645 kb on - strand at 497.732 kb on - strand, within SMa0892 at 497.830 kb on + strand, within SMa0892 at 498.158 kb on - strand, within SMa0892 at 498.158 kb on - strand, within SMa0892 at 498.217 kb on + strand, within SMa0892 at 498.217 kb on + strand, within SMa0892 at 498.317 kb on - strand, within SMa0892 at 498.325 kb on + strand, within SMa0892 at 498.325 kb on + strand, within SMa0892 at 498.325 kb on + strand, within SMa0892 at 498.325 kb on + strand, within SMa0892 at 498.326 kb on - strand, within SMa0892 at 498.377 kb on + strand, within SMa0892
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 495,152 - -0.4 495,152 - -0.5 495,293 + SMa0888 0.12 +0.0 495,436 - SMa0888 0.29 +0.1 495,538 + SMa0888 0.42 -0.4 495,538 + SMa0888 0.42 -0.3 495,538 + SMa0888 0.42 -0.2 495,538 + SMa0888 0.42 +0.7 495,539 - SMa0888 0.42 -0.1 495,540 + SMa0888 0.42 -0.1 495,540 + SMa0888 0.42 -0.3 495,891 + SMa0888 0.85 +3.7 495,891 + SMa0888 0.85 -0.6 495,891 + SMa0888 0.85 +0.7 495,892 - SMa0888 0.85 -0.9 495,892 - SMa0888 0.85 +1.3 495,892 - SMa0888 0.85 +0.1 495,892 - SMa0888 0.85 -0.2 496,161 - SMa0890 0.14 -1.4 496,161 - SMa0890 0.14 -0.8 496,313 - SMa0890 0.24 +0.4 496,465 + SMa0890 0.35 +0.9 496,465 + SMa0890 0.35 +0.5 496,561 + SMa0890 0.42 -1.4 496,561 + SMa0890 0.42 -0.4 496,575 + SMa0890 0.43 -1.2 496,576 - SMa0890 0.43 +1.2 496,659 - SMa0890 0.48 -1.7 496,659 - SMa0890 0.48 -0.0 496,659 - SMa0890 0.48 +0.2 496,751 - SMa0890 0.55 +0.3 496,996 - SMa0890 0.72 -1.2 497,035 + SMa0890 0.75 +0.7 497,035 + SMa0890 0.75 +0.0 497,036 - SMa0890 0.75 -1.3 497,036 - SMa0890 0.75 -0.7 497,280 - -0.3 497,280 - -0.9 497,362 + -0.3 497,363 - +0.0 497,363 - +0.6 497,623 + -1.6 497,644 + +1.7 497,645 - +0.5 497,732 - SMa0892 0.10 +0.4 497,830 + SMa0892 0.13 -1.7 498,158 - SMa0892 0.23 -0.2 498,158 - SMa0892 0.23 -1.3 498,217 + SMa0892 0.25 -0.3 498,217 + SMa0892 0.25 +0.0 498,317 - SMa0892 0.28 -0.7 498,325 + SMa0892 0.29 +1.2 498,325 + SMa0892 0.29 -0.2 498,325 + SMa0892 0.29 +0.4 498,325 + SMa0892 0.29 +0.2 498,326 - SMa0892 0.29 +0.7 498,377 + SMa0892 0.30 -0.5
Or see this region's nucleotide sequence