Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0792 and SMa0793 overlap by 4 nucleotides SMa0793 and SMa0794 overlap by 4 nucleotides SMa0794 and SMa0796 are separated by 5 nucleotides
SMa0792: SMa0792 - hypothetical protein, at 431,220 to 432,053
SMa0792
SMa0793: SMa0793 - hypothetical protein, at 432,050 to 432,985
SMa0793
SMa0794: SMa0794 - Monoxygenase, at 432,982 to 434,022
SMa0794
SMa0796: SMa0796 - hypothetical protein, at 434,028 to 435,491
SMa0796
Position (kb) 432
433
434
435 Strain fitness (log2 ratio) -1
0
1
2
3 at 431.986 kb on + strand at 431.987 kb on - strand at 432.160 kb on + strand, within SMa0793 at 432.175 kb on + strand, within SMa0793 at 432.176 kb on - strand, within SMa0793 at 432.176 kb on - strand, within SMa0793 at 432.236 kb on + strand, within SMa0793 at 432.451 kb on - strand, within SMa0793 at 432.451 kb on - strand, within SMa0793 at 432.451 kb on - strand, within SMa0793 at 432.606 kb on + strand, within SMa0793 at 432.741 kb on - strand, within SMa0793 at 432.874 kb on + strand, within SMa0793 at 432.875 kb on - strand, within SMa0793 at 432.923 kb on + strand at 433.154 kb on + strand, within SMa0794 at 433.182 kb on + strand, within SMa0794 at 433.182 kb on + strand, within SMa0794 at 433.183 kb on - strand, within SMa0794 at 433.312 kb on + strand, within SMa0794 at 433.313 kb on - strand, within SMa0794 at 433.678 kb on + strand, within SMa0794 at 433.678 kb on + strand, within SMa0794 at 433.678 kb on + strand at 433.679 kb on - strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.731 kb on - strand, within SMa0794 at 433.731 kb on - strand, within SMa0794 at 433.731 kb on - strand, within SMa0794 at 433.733 kb on - strand, within SMa0794 at 433.733 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.741 kb on + strand, within SMa0794 at 433.904 kb on - strand, within SMa0794 at 433.904 kb on - strand, within SMa0794 at 433.904 kb on - strand, within SMa0794 at 433.928 kb on - strand at 433.928 kb on - strand at 434.021 kb on - strand at 434.046 kb on + strand at 434.046 kb on + strand at 434.046 kb on + strand at 434.047 kb on - strand at 434.047 kb on - strand at 434.337 kb on + strand, within SMa0796 at 434.337 kb on + strand, within SMa0796 at 434.349 kb on + strand, within SMa0796 at 434.353 kb on - strand, within SMa0796 at 434.361 kb on + strand, within SMa0796 at 434.394 kb on + strand, within SMa0796 at 434.394 kb on + strand, within SMa0796 at 434.394 kb on + strand, within SMa0796 at 434.394 kb on + strand, within SMa0796 at 434.395 kb on - strand, within SMa0796 at 434.395 kb on - strand, within SMa0796 at 434.693 kb on - strand, within SMa0796 at 434.693 kb on - strand, within SMa0796 at 434.693 kb on - strand, within SMa0796 at 434.726 kb on + strand, within SMa0796 at 434.726 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.729 kb on - strand, within SMa0796 at 434.729 kb on - strand, within SMa0796 at 434.731 kb on + strand, within SMa0796
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 431,986 + +0.4 431,987 - -0.9 432,160 + SMa0793 0.12 -1.2 432,175 + SMa0793 0.13 -1.3 432,176 - SMa0793 0.13 +0.3 432,176 - SMa0793 0.13 +0.1 432,236 + SMa0793 0.20 -1.3 432,451 - SMa0793 0.43 +0.9 432,451 - SMa0793 0.43 +0.8 432,451 - SMa0793 0.43 +0.1 432,606 + SMa0793 0.59 -0.8 432,741 - SMa0793 0.74 +0.8 432,874 + SMa0793 0.88 -1.0 432,875 - SMa0793 0.88 -0.7 432,923 + +0.3 433,154 + SMa0794 0.17 +0.7 433,182 + SMa0794 0.19 +0.5 433,182 + SMa0794 0.19 +0.9 433,183 - SMa0794 0.19 +2.8 433,312 + SMa0794 0.32 +0.1 433,313 - SMa0794 0.32 +0.4 433,678 + SMa0794 0.67 +0.4 433,678 + SMa0794 0.67 -0.3 433,678 + +1.8 433,679 - SMa0794 0.67 -0.6 433,730 + SMa0794 0.72 -0.1 433,730 + SMa0794 0.72 +2.4 433,730 + SMa0794 0.72 -0.6 433,730 + SMa0794 0.72 -0.0 433,730 + SMa0794 0.72 +0.3 433,731 - SMa0794 0.72 +0.1 433,731 - SMa0794 0.72 +0.4 433,731 - SMa0794 0.72 +0.9 433,733 - SMa0794 0.72 +1.2 433,733 - SMa0794 0.72 +0.9 433,736 - SMa0794 0.72 -0.0 433,736 - SMa0794 0.72 +0.7 433,736 - SMa0794 0.72 +0.2 433,736 - SMa0794 0.72 +0.7 433,736 - SMa0794 0.72 -0.5 433,736 - SMa0794 0.72 -0.6 433,741 + SMa0794 0.73 +1.2 433,904 - SMa0794 0.89 -0.4 433,904 - SMa0794 0.89 -0.4 433,904 - SMa0794 0.89 +0.1 433,928 - -1.4 433,928 - +1.2 434,021 - +0.4 434,046 + +0.3 434,046 + +0.3 434,046 + +1.0 434,047 - -0.6 434,047 - -0.4 434,337 + SMa0796 0.21 +0.1 434,337 + SMa0796 0.21 +1.2 434,349 + SMa0796 0.22 -1.6 434,353 - SMa0796 0.22 -1.2 434,361 + SMa0796 0.23 +0.2 434,394 + SMa0796 0.25 -0.5 434,394 + SMa0796 0.25 +0.8 434,394 + SMa0796 0.25 -0.1 434,394 + SMa0796 0.25 +0.4 434,395 - SMa0796 0.25 +0.4 434,395 - SMa0796 0.25 +0.5 434,693 - SMa0796 0.45 +1.1 434,693 - SMa0796 0.45 -0.6 434,693 - SMa0796 0.45 -0.3 434,726 + SMa0796 0.48 -1.3 434,726 + SMa0796 0.48 -0.5 434,728 + SMa0796 0.48 -0.0 434,728 + SMa0796 0.48 -0.1 434,728 + SMa0796 0.48 +0.8 434,728 + SMa0796 0.48 +0.8 434,728 + +0.4 434,728 + SMa0796 0.48 -0.3 434,728 + SMa0796 0.48 +0.3 434,728 + SMa0796 0.48 -0.3 434,729 - SMa0796 0.48 +0.2 434,729 - SMa0796 0.48 -0.5 434,731 + SMa0796 0.48 +0.1
Or see this region's nucleotide sequence