Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0333 and SMa0335 are separated by 180 nucleotides SMa0335 and SMa0337 overlap by 14 nucleotides SMa0337 and SMa0339 are separated by 25 nucleotides SMa0339 and SMa0340 are separated by 71 nucleotides
SMa0333: SMa0333 - hypothetical protein, at 183,183 to 183,395
SMa0333
SMa0335: SMa0335 - 3-ketoacyl-ACP reductase, at 183,576 to 184,352
SMa0335
SMa0337: SMa0337 - hypothetical protein, at 184,339 to 184,821
SMa0337
SMa0339: SMa0339 - short chain alcohol dehydrogenase-related dehydrogenase, at 184,847 to 185,620
SMa0339
SMa0340: SMa0340 - TrpR binding protein WrbA, at 185,692 to 186,300
SMa0340
Position (kb) 184
185 Strain fitness (log2 ratio) -2
-1
0
1
2 at 183.381 kb on - strand at 183.381 kb on - strand at 183.628 kb on + strand at 183.628 kb on + strand at 183.628 kb on + strand at 183.628 kb on + strand at 183.628 kb on + strand at 183.629 kb on - strand at 183.629 kb on - strand at 183.868 kb on + strand, within SMa0335 at 183.868 kb on + strand, within SMa0335 at 184.242 kb on - strand, within SMa0335 at 184.422 kb on + strand, within SMa0337 at 184.423 kb on - strand, within SMa0337 at 184.423 kb on - strand, within SMa0337 at 184.425 kb on + strand, within SMa0337 at 184.426 kb on - strand, within SMa0337 at 184.553 kb on + strand, within SMa0337 at 184.554 kb on - strand, within SMa0337 at 184.644 kb on - strand, within SMa0337 at 184.795 kb on + strand at 184.796 kb on + strand at 184.797 kb on - strand at 184.797 kb on - strand at 184.797 kb on - strand at 184.908 kb on + strand at 184.908 kb on + strand at 184.908 kb on + strand at 184.908 kb on + strand at 184.909 kb on - strand at 185.311 kb on - strand, within SMa0339 at 185.311 kb on - strand, within SMa0339 at 185.387 kb on + strand, within SMa0339 at 185.387 kb on + strand, within SMa0339 at 185.693 kb on + strand at 185.693 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 183,381 - +0.0 183,381 - +0.8 183,628 + -1.1 183,628 + -0.7 183,628 + +2.4 183,628 + +0.7 183,628 + -0.1 183,629 - -0.9 183,629 - +0.5 183,868 + SMa0335 0.38 +0.2 183,868 + SMa0335 0.38 -0.4 184,242 - SMa0335 0.86 -0.4 184,422 + SMa0337 0.17 -0.3 184,423 - SMa0337 0.17 -0.9 184,423 - SMa0337 0.17 -1.1 184,425 + SMa0337 0.18 -0.1 184,426 - SMa0337 0.18 +0.4 184,553 + SMa0337 0.44 -0.6 184,554 - SMa0337 0.45 -1.0 184,644 - SMa0337 0.63 -0.7 184,795 + +0.3 184,796 + -0.1 184,797 - -0.8 184,797 - -0.1 184,797 - -1.3 184,908 + -0.3 184,908 + -2.5 184,908 + -0.6 184,908 + -0.8 184,909 - -0.2 185,311 - SMa0339 0.60 +1.3 185,311 - SMa0339 0.60 -0.8 185,387 + SMa0339 0.70 -0.7 185,387 + SMa0339 0.70 -0.8 185,693 + +0.9 185,693 + +0.6
Or see this region's nucleotide sequence