Strain Fitness in Sinorhizobium meliloti 1021 around SMa0228

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0226 and SMa0228 are separated by 166 nucleotidesSMa0228 and SMa0229 are separated by 318 nucleotidesSMa0229 and SMa0232 are separated by 219 nucleotides SMa0226: SMa0226 - dehydrogenase, at 125,261 to 126,253 SMa0226 SMa0228: SMa0228 - glutamate dehydrogenase, at 126,420 to 127,766 SMa0228 SMa0229: SMa0229 - hypothetical protein, at 128,085 to 128,507 SMa0229 SMa0232: SMa0232 - hypothetical protein, at 128,727 to 129,278 SMa0232 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 125.435 kb on + strand, within SMa0226at 125.435 kb on + strand, within SMa0226at 125.640 kb on - strand, within SMa0226at 125.641 kb on + strand, within SMa0226at 125.669 kb on + strand, within SMa0226at 125.670 kb on - strand, within SMa0226at 125.670 kb on - strand, within SMa0226at 125.670 kb on - strand, within SMa0226at 125.912 kb on + strand, within SMa0226at 125.913 kb on - strand, within SMa0226at 125.913 kb on - strand, within SMa0226at 126.283 kb on + strandat 126.284 kb on - strandat 126.284 kb on - strandat 126.374 kb on - strandat 126.471 kb on - strandat 126.471 kb on - strandat 126.535 kb on + strandat 126.691 kb on - strand, within SMa0228at 126.901 kb on - strand, within SMa0228at 126.951 kb on + strand, within SMa0228at 126.966 kb on + strand, within SMa0228at 126.966 kb on + strand, within SMa0228at 126.966 kb on + strand, within SMa0228at 126.966 kb on + strand, within SMa0228at 126.967 kb on - strand, within SMa0228at 126.968 kb on + strand, within SMa0228at 126.969 kb on - strand, within SMa0228at 126.969 kb on - strand, within SMa0228at 126.969 kb on - strand, within SMa0228at 126.978 kb on - strand, within SMa0228at 126.987 kb on + strand, within SMa0228at 126.987 kb on + strand, within SMa0228at 127.071 kb on + strand, within SMa0228at 127.071 kb on + strand, within SMa0228at 127.072 kb on - strand, within SMa0228at 127.150 kb on + strand, within SMa0228at 127.151 kb on - strand, within SMa0228at 127.151 kb on - strand, within SMa0228at 127.151 kb on - strand, within SMa0228at 127.158 kb on + strand, within SMa0228at 127.158 kb on + strand, within SMa0228at 127.159 kb on - strand, within SMa0228at 127.160 kb on + strand, within SMa0228at 127.161 kb on - strand, within SMa0228at 127.299 kb on + strand, within SMa0228at 127.329 kb on + strand, within SMa0228at 127.329 kb on + strand, within SMa0228at 127.330 kb on - strand, within SMa0228at 127.330 kb on - strand, within SMa0228at 127.330 kb on - strand, within SMa0228at 127.330 kb on - strand, within SMa0228at 127.330 kb on - strand, within SMa0228at 127.330 kb on - strand, within SMa0228at 127.331 kb on + strand, within SMa0228at 127.331 kb on + strand, within SMa0228at 127.332 kb on - strand, within SMa0228at 127.332 kb on - strand, within SMa0228at 127.333 kb on + strand, within SMa0228at 127.333 kb on + strand, within SMa0228at 127.333 kb on + strand, within SMa0228at 127.333 kb on + strand, within SMa0228at 127.333 kb on + strand, within SMa0228at 127.334 kb on - strand, within SMa0228at 127.334 kb on - strand, within SMa0228at 127.334 kb on - strand, within SMa0228at 127.334 kb on - strand, within SMa0228at 127.334 kb on - strand, within SMa0228at 127.510 kb on + strand, within SMa0228at 127.510 kb on + strand, within SMa0228at 127.677 kb on + strandat 127.677 kb on + strandat 127.678 kb on - strandat 127.695 kb on + strandat 127.696 kb on - strandat 127.696 kb on - strandat 127.714 kb on + strandat 127.715 kb on - strandat 127.896 kb on + strandat 127.896 kb on + strandat 127.896 kb on + strandat 127.896 kb on + strandat 127.896 kb on + strandat 127.897 kb on - strandat 127.898 kb on + strandat 127.899 kb on - strandat 127.941 kb on - strandat 128.030 kb on - strandat 128.074 kb on + strandat 128.075 kb on - strandat 128.075 kb on - strandat 128.075 kb on - strandat 128.075 kb on - strandat 128.142 kb on + strand, within SMa0229at 128.166 kb on + strand, within SMa0229at 128.166 kb on + strand, within SMa0229at 128.279 kb on + strand, within SMa0229at 128.279 kb on + strand, within SMa0229at 128.279 kb on + strand, within SMa0229at 128.279 kb on + strand, within SMa0229at 128.280 kb on - strand, within SMa0229at 128.280 kb on - strand, within SMa0229at 128.332 kb on - strand, within SMa0229at 128.332 kb on - strand, within SMa0229at 128.462 kb on - strand, within SMa0229at 128.462 kb on - strand, within SMa0229at 128.607 kb on - strandat 128.704 kb on + strandat 128.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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125,435 + SMa0226 0.18 +0.2
125,435 + SMa0226 0.18 -0.5
125,640 - SMa0226 0.38 +0.0
125,641 + SMa0226 0.38 -1.0
125,669 + SMa0226 0.41 +0.9
125,670 - SMa0226 0.41 -0.5
125,670 - SMa0226 0.41 +1.2
125,670 - SMa0226 0.41 +1.3
125,912 + SMa0226 0.66 -0.1
125,913 - SMa0226 0.66 +1.4
125,913 - SMa0226 0.66 -0.6
126,283 + -0.2
126,284 - +0.2
126,284 - -0.2
126,374 - -0.3
126,471 - -0.1
126,471 - -0.3
126,535 + -0.7
126,691 - SMa0228 0.20 -1.4
126,901 - SMa0228 0.36 +0.8
126,951 + SMa0228 0.39 -0.6
126,966 + SMa0228 0.41 -0.1
126,966 + SMa0228 0.41 -0.2
126,966 + SMa0228 0.41 +0.5
126,966 + SMa0228 0.41 -0.5
126,967 - SMa0228 0.41 -0.2
126,968 + SMa0228 0.41 -2.0
126,969 - SMa0228 0.41 +0.2
126,969 - SMa0228 0.41 -0.0
126,969 - SMa0228 0.41 +1.4
126,978 - SMa0228 0.41 +0.2
126,987 + SMa0228 0.42 -0.5
126,987 + SMa0228 0.42 -0.8
127,071 + SMa0228 0.48 +0.5
127,071 + SMa0228 0.48 -2.3
127,072 - SMa0228 0.48 -1.4
127,150 + SMa0228 0.54 +2.3
127,151 - SMa0228 0.54 -0.3
127,151 - SMa0228 0.54 +1.1
127,151 - SMa0228 0.54 -0.5
127,158 + SMa0228 0.55 -1.3
127,158 + SMa0228 0.55 -1.7
127,159 - SMa0228 0.55 -2.2
127,160 + SMa0228 0.55 -0.4
127,161 - SMa0228 0.55 -0.1
127,299 + SMa0228 0.65 -1.5
127,329 + SMa0228 0.67 -1.1
127,329 + SMa0228 0.67 -0.7
127,330 - SMa0228 0.68 +0.1
127,330 - SMa0228 0.68 -0.6
127,330 - SMa0228 0.68 -0.1
127,330 - SMa0228 0.68 -0.1
127,330 - SMa0228 0.68 +0.1
127,330 - SMa0228 0.68 -0.9
127,331 + SMa0228 0.68 -0.6
127,331 + SMa0228 0.68 -2.9
127,332 - SMa0228 0.68 +1.0
127,332 - SMa0228 0.68 +0.6
127,333 + SMa0228 0.68 +0.4
127,333 + SMa0228 0.68 -0.7
127,333 + SMa0228 0.68 -0.3
127,333 + SMa0228 0.68 +0.0
127,333 + SMa0228 0.68 -1.5
127,334 - SMa0228 0.68 -0.7
127,334 - SMa0228 0.68 +0.1
127,334 - SMa0228 0.68 -1.3
127,334 - SMa0228 0.68 +0.3
127,334 - SMa0228 0.68 +0.4
127,510 + SMa0228 0.81 -0.3
127,510 + SMa0228 0.81 +1.6
127,677 + +1.3
127,677 + +0.3
127,678 - -0.2
127,695 + -0.7
127,696 - +0.5
127,696 - -3.3
127,714 + -0.2
127,715 - -0.4
127,896 + +0.5
127,896 + -0.7
127,896 + -0.4
127,896 + -0.4
127,896 + -0.9
127,897 - +0.1
127,898 + +0.5
127,899 - -0.5
127,941 - -0.9
128,030 - +0.0
128,074 + -0.3
128,075 - +0.0
128,075 - -0.5
128,075 - +1.9
128,075 - +0.1
128,142 + SMa0229 0.13 -0.9
128,166 + SMa0229 0.19 -0.6
128,166 + SMa0229 0.19 -0.6
128,279 + SMa0229 0.46 +1.1
128,279 + SMa0229 0.46 -1.1
128,279 + SMa0229 0.46 -0.3
128,279 + SMa0229 0.46 -1.0
128,280 - SMa0229 0.46 +0.3
128,280 - SMa0229 0.46 -0.9
128,332 - SMa0229 0.58 -0.2
128,332 - SMa0229 0.58 +0.3
128,462 - SMa0229 0.89 -0.3
128,462 - SMa0229 0.89 +0.5
128,607 - +0.2
128,704 + +0.0
128,705 - +0.4

Or see this region's nucleotide sequence