Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0104 and SMa0105 are separated by 87 nucleotides SMa0105 and SMa0106 are separated by 5 nucleotides SMa0106 and SMa0108 overlap by 4 nucleotides
SMa0104: SMa0104 - ABC transporter substrate-binding protein, at 52,944 to 54,536
SMa0104
SMa0105: SMa0105 - ABC transporter permease, at 54,624 to 55,559
SMa0105
SMa0106: SMa0106 - ABC transporter permease, at 55,565 to 56,386
SMa0106
SMa0108: SMa0108 - ABC transporter ATP-binding protein, at 56,383 to 57,297
SMa0108
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 53.727 kb on + strand, within SMa0104 at 53.727 kb on + strand, within SMa0104 at 53.728 kb on - strand, within SMa0104 at 53.736 kb on + strand, within SMa0104 at 53.737 kb on - strand, within SMa0104 at 53.787 kb on + strand, within SMa0104 at 53.788 kb on - strand, within SMa0104 at 53.788 kb on - strand, within SMa0104 at 53.788 kb on - strand, within SMa0104 at 53.798 kb on + strand, within SMa0104 at 53.977 kb on - strand, within SMa0104 at 54.240 kb on + strand, within SMa0104 at 54.282 kb on + strand, within SMa0104 at 54.282 kb on + strand, within SMa0104 at 54.282 kb on + strand, within SMa0104 at 54.282 kb on + strand, within SMa0104 at 54.283 kb on - strand, within SMa0104 at 54.283 kb on - strand, within SMa0104 at 54.283 kb on - strand, within SMa0104 at 54.283 kb on - strand, within SMa0104 at 54.309 kb on + strand, within SMa0104 at 54.412 kb on - strand at 54.412 kb on - strand at 54.432 kb on + strand at 54.535 kb on - strand at 54.556 kb on + strand at 54.598 kb on - strand at 54.662 kb on - strand at 54.690 kb on - strand at 54.690 kb on - strand at 54.692 kb on - strand at 54.692 kb on - strand at 54.834 kb on + strand, within SMa0105 at 54.834 kb on + strand, within SMa0105 at 54.834 kb on + strand, within SMa0105 at 54.835 kb on - strand, within SMa0105 at 54.835 kb on - strand, within SMa0105 at 54.835 kb on - strand, within SMa0105 at 54.835 kb on - strand, within SMa0105 at 55.019 kb on + strand, within SMa0105 at 55.089 kb on + strand, within SMa0105 at 55.089 kb on + strand, within SMa0105 at 55.089 kb on + strand, within SMa0105 at 55.090 kb on - strand, within SMa0105 at 55.090 kb on - strand, within SMa0105 at 55.090 kb on - strand, within SMa0105 at 55.524 kb on + strand at 55.525 kb on - strand at 55.847 kb on + strand, within SMa0106 at 55.984 kb on + strand, within SMa0106 at 56.048 kb on + strand, within SMa0106 at 56.049 kb on - strand, within SMa0106 at 56.128 kb on + strand, within SMa0106 at 56.497 kb on + strand, within SMa0108 at 56.497 kb on + strand, within SMa0108
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 53,727 + SMa0104 0.49 -2.2 53,727 + SMa0104 0.49 -0.3 53,728 - SMa0104 0.49 +0.5 53,736 + SMa0104 0.50 -0.8 53,737 - SMa0104 0.50 -0.6 53,787 + SMa0104 0.53 -0.5 53,788 - SMa0104 0.53 +0.7 53,788 - SMa0104 0.53 +1.0 53,788 - SMa0104 0.53 -0.3 53,798 + SMa0104 0.54 -0.4 53,977 - SMa0104 0.65 -0.6 54,240 + SMa0104 0.81 -0.6 54,282 + SMa0104 0.84 -0.4 54,282 + SMa0104 0.84 -0.7 54,282 + SMa0104 0.84 -0.2 54,282 + SMa0104 0.84 -0.1 54,283 - SMa0104 0.84 +0.5 54,283 - SMa0104 0.84 +0.1 54,283 - SMa0104 0.84 +0.2 54,283 - SMa0104 0.84 -0.0 54,309 + SMa0104 0.86 +0.4 54,412 - +0.4 54,412 - -0.2 54,432 + -0.6 54,535 - -0.3 54,556 + +0.5 54,598 - -0.2 54,662 - -0.5 54,690 - -0.3 54,690 - +0.3 54,692 - -0.7 54,692 - -0.9 54,834 + SMa0105 0.22 -0.3 54,834 + SMa0105 0.22 -1.1 54,834 + SMa0105 0.22 -0.6 54,835 - SMa0105 0.23 +0.2 54,835 - SMa0105 0.23 +3.2 54,835 - SMa0105 0.23 -0.4 54,835 - SMa0105 0.23 -0.2 55,019 + SMa0105 0.42 -0.8 55,089 + SMa0105 0.50 -0.2 55,089 + SMa0105 0.50 +0.0 55,089 + SMa0105 0.50 -0.4 55,090 - SMa0105 0.50 -0.3 55,090 - SMa0105 0.50 +0.4 55,090 - SMa0105 0.50 +1.3 55,524 + -0.6 55,525 - +0.0 55,847 + SMa0106 0.34 -0.6 55,984 + SMa0106 0.51 -0.6 56,048 + SMa0106 0.59 +0.3 56,049 - SMa0106 0.59 +0.7 56,128 + SMa0106 0.68 +0.8 56,497 + SMa0108 0.12 -0.6 56,497 + SMa0108 0.12 +0.9
Or see this region's nucleotide sequence