Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0039 and SMa0041 are separated by 101 nucleotides SMa0041 and SMa0044 are separated by 28 nucleotides SMa0044 and SMa0045 are separated by 164 nucleotides
SMa0039: SMa0039 - LysR family transcriptional regulator, at 23,398 to 24,297
SMa0039
SMa0041: SMa0041 - quinone oxidoreductase, at 24,399 to 25,388
SMa0041
SMa0044: SMa0044 - hypothetical protein, at 25,417 to 25,683
SMa0044
SMa0045: SMa0045 - carbonic anhydrase, at 25,848 to 26,597
SMa0045
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.498 kb on + strand, within SMa0039 at 23.498 kb on + strand, within SMa0039 at 23.499 kb on - strand, within SMa0039 at 23.783 kb on + strand, within SMa0039 at 23.783 kb on + strand, within SMa0039 at 23.872 kb on - strand, within SMa0039 at 24.006 kb on + strand, within SMa0039 at 24.006 kb on + strand, within SMa0039 at 24.007 kb on - strand, within SMa0039 at 24.101 kb on + strand, within SMa0039 at 24.102 kb on - strand, within SMa0039 at 24.102 kb on - strand, within SMa0039 at 24.104 kb on + strand, within SMa0039 at 24.105 kb on - strand, within SMa0039 at 24.110 kb on + strand, within SMa0039 at 24.110 kb on + strand, within SMa0039 at 24.111 kb on - strand, within SMa0039 at 24.153 kb on + strand, within SMa0039 at 24.154 kb on - strand, within SMa0039 at 24.154 kb on - strand, within SMa0039 at 24.551 kb on + strand, within SMa0041 at 24.552 kb on + strand, within SMa0041 at 24.552 kb on + strand, within SMa0041 at 24.552 kb on + strand, within SMa0041 at 24.553 kb on - strand, within SMa0041 at 24.553 kb on - strand, within SMa0041 at 24.553 kb on - strand, within SMa0041 at 24.553 kb on - strand, within SMa0041 at 24.696 kb on + strand, within SMa0041 at 24.913 kb on + strand, within SMa0041 at 25.064 kb on - strand, within SMa0041 at 25.114 kb on + strand, within SMa0041 at 25.115 kb on - strand, within SMa0041 at 25.200 kb on + strand, within SMa0041 at 25.204 kb on + strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.669 kb on + strand at 25.670 kb on - strand at 25.745 kb on - strand at 25.812 kb on + strand at 25.824 kb on + strand at 25.824 kb on + strand at 25.825 kb on - strand at 25.825 kb on - strand at 25.825 kb on - strand at 25.860 kb on + strand at 25.861 kb on - strand at 25.861 kb on - strand at 25.867 kb on + strand at 25.909 kb on + strand at 26.017 kb on + strand, within SMa0045 at 26.017 kb on + strand, within SMa0045 at 26.017 kb on + strand, within SMa0045 at 26.018 kb on - strand, within SMa0045 at 26.018 kb on - strand, within SMa0045 at 26.026 kb on + strand, within SMa0045 at 26.026 kb on + strand, within SMa0045 at 26.030 kb on + strand, within SMa0045 at 26.030 kb on + strand, within SMa0045 at 26.030 kb on + strand, within SMa0045 at 26.031 kb on - strand, within SMa0045 at 26.031 kb on - strand, within SMa0045 at 26.031 kb on - strand, within SMa0045 at 26.031 kb on - strand, within SMa0045 at 26.031 kb on - strand, within SMa0045 at 26.031 kb on - strand, within SMa0045 at 26.263 kb on + strand, within SMa0045 at 26.264 kb on - strand, within SMa0045 at 26.264 kb on - strand, within SMa0045 at 26.330 kb on + strand, within SMa0045 at 26.331 kb on - strand, within SMa0045
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 23,498 + SMa0039 0.11 +0.0 23,498 + SMa0039 0.11 -0.3 23,499 - SMa0039 0.11 -1.2 23,783 + SMa0039 0.43 +0.1 23,783 + SMa0039 0.43 -0.3 23,872 - SMa0039 0.53 +0.3 24,006 + SMa0039 0.68 +0.3 24,006 + SMa0039 0.68 -1.3 24,007 - SMa0039 0.68 +2.0 24,101 + SMa0039 0.78 -1.1 24,102 - SMa0039 0.78 -0.3 24,102 - SMa0039 0.78 -0.9 24,104 + SMa0039 0.78 +0.2 24,105 - SMa0039 0.79 -0.7 24,110 + SMa0039 0.79 -1.1 24,110 + SMa0039 0.79 -1.0 24,111 - SMa0039 0.79 +1.8 24,153 + SMa0039 0.84 -0.2 24,154 - SMa0039 0.84 +0.2 24,154 - SMa0039 0.84 -0.5 24,551 + SMa0041 0.15 +1.0 24,552 + SMa0041 0.15 +0.3 24,552 + SMa0041 0.15 -0.4 24,552 + SMa0041 0.15 +0.0 24,553 - SMa0041 0.16 -0.5 24,553 - SMa0041 0.16 -1.2 24,553 - SMa0041 0.16 -1.4 24,553 - SMa0041 0.16 -0.7 24,696 + SMa0041 0.30 -0.5 24,913 + SMa0041 0.52 +0.3 25,064 - SMa0041 0.67 +0.0 25,114 + SMa0041 0.72 -0.0 25,115 - SMa0041 0.72 +0.2 25,200 + SMa0041 0.81 +1.9 25,204 + SMa0041 0.81 -0.9 25,205 - SMa0041 0.81 -0.5 25,205 - SMa0041 0.81 +0.0 25,205 - SMa0041 0.81 +1.4 25,205 - SMa0041 0.81 -1.2 25,205 - SMa0041 0.81 -0.1 25,669 + +0.6 25,670 - -0.0 25,745 - +1.0 25,812 + +1.0 25,824 + -2.1 25,824 + -1.4 25,825 - +0.1 25,825 - -0.1 25,825 - -1.0 25,860 + -0.2 25,861 - -1.3 25,861 - -0.5 25,867 + -0.5 25,909 + -2.2 26,017 + SMa0045 0.23 -1.5 26,017 + SMa0045 0.23 +2.2 26,017 + SMa0045 0.23 -0.0 26,018 - SMa0045 0.23 -0.3 26,018 - SMa0045 0.23 -0.4 26,026 + SMa0045 0.24 -0.4 26,026 + SMa0045 0.24 -1.6 26,030 + SMa0045 0.24 +0.1 26,030 + SMa0045 0.24 -0.4 26,030 + SMa0045 0.24 +1.1 26,031 - SMa0045 0.24 -0.3 26,031 - SMa0045 0.24 -0.2 26,031 - SMa0045 0.24 -0.2 26,031 - SMa0045 0.24 -1.1 26,031 - SMa0045 0.24 +0.9 26,031 - SMa0045 0.24 -0.1 26,263 + SMa0045 0.55 -0.3 26,264 - SMa0045 0.55 +0.3 26,264 - SMa0045 0.55 +0.6 26,330 + SMa0045 0.64 -0.4 26,331 - SMa0045 0.64 -0.7
Or see this region's nucleotide sequence