Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21587 and SM_b21588 are separated by 142 nucleotides SM_b21588 and SM_b21589 overlap by 4 nucleotides
SM_b21587: SM_b21587 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,126,895 to 1,127,857
_b21587
SM_b21588: SM_b21588 - sugar uptake ABC transporter ATP-binding protein, at 1,128,000 to 1,129,517
_b21588
SM_b21589: SM_b21589 - sugar uptake ABC transporter permease, at 1,129,514 to 1,130,539
_b21589
Position (kb)
1127
1128
1129
1130 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1127.261 kb on + strand, within SM_b21587 at 1127.261 kb on + strand, within SM_b21587 at 1127.434 kb on + strand, within SM_b21587 at 1127.434 kb on + strand, within SM_b21587 at 1127.434 kb on + strand, within SM_b21587 at 1127.434 kb on + strand, within SM_b21587 at 1127.435 kb on - strand, within SM_b21587 at 1127.546 kb on + strand, within SM_b21587 at 1127.828 kb on + strand at 1127.828 kb on + strand at 1128.020 kb on + strand at 1128.265 kb on - strand, within SM_b21588 at 1128.294 kb on - strand, within SM_b21588 at 1128.432 kb on + strand, within SM_b21588 at 1128.432 kb on + strand, within SM_b21588 at 1128.433 kb on - strand, within SM_b21588 at 1128.433 kb on - strand, within SM_b21588 at 1128.560 kb on - strand, within SM_b21588 at 1128.621 kb on + strand, within SM_b21588 at 1129.147 kb on - strand, within SM_b21588 at 1129.147 kb on - strand, within SM_b21588 at 1129.535 kb on + strand at 1129.535 kb on + strand at 1129.536 kb on - strand at 1129.536 kb on - strand at 1129.643 kb on + strand, within SM_b21589 at 1129.644 kb on - strand, within SM_b21589 at 1129.651 kb on + strand, within SM_b21589 at 1129.651 kb on + strand, within SM_b21589 at 1129.965 kb on + strand, within SM_b21589 at 1129.966 kb on - strand, within SM_b21589 at 1129.966 kb on - strand, within SM_b21589 at 1129.966 kb on - strand, within SM_b21589 at 1130.174 kb on + strand, within SM_b21589 at 1130.174 kb on + strand, within SM_b21589 at 1130.175 kb on - strand, within SM_b21589 at 1130.175 kb on - strand, within SM_b21589 at 1130.259 kb on + strand, within SM_b21589 at 1130.259 kb on + strand, within SM_b21589 at 1130.260 kb on - strand, within SM_b21589 at 1130.260 kb on - strand, within SM_b21589
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 1,127,261 + SM_b21587 0.38 -0.1 1,127,261 + SM_b21587 0.38 +2.5 1,127,434 + SM_b21587 0.56 -0.1 1,127,434 + SM_b21587 0.56 -0.0 1,127,434 + SM_b21587 0.56 +0.3 1,127,434 + SM_b21587 0.56 -0.2 1,127,435 - SM_b21587 0.56 -0.2 1,127,546 + SM_b21587 0.68 +0.6 1,127,828 + -0.6 1,127,828 + -0.8 1,128,020 + -1.4 1,128,265 - SM_b21588 0.17 -0.3 1,128,294 - SM_b21588 0.19 -1.1 1,128,432 + SM_b21588 0.28 -1.9 1,128,432 + SM_b21588 0.28 -2.5 1,128,433 - SM_b21588 0.29 -1.6 1,128,433 - SM_b21588 0.29 +1.1 1,128,560 - SM_b21588 0.37 -0.6 1,128,621 + SM_b21588 0.41 +0.2 1,129,147 - SM_b21588 0.76 +0.1 1,129,147 - SM_b21588 0.76 -1.7 1,129,535 + +0.3 1,129,535 + +0.9 1,129,536 - +0.6 1,129,536 - -0.6 1,129,643 + SM_b21589 0.13 -0.6 1,129,644 - SM_b21589 0.13 -0.1 1,129,651 + SM_b21589 0.13 +0.2 1,129,651 + SM_b21589 0.13 -3.0 1,129,965 + SM_b21589 0.44 -0.3 1,129,966 - SM_b21589 0.44 +0.8 1,129,966 - SM_b21589 0.44 +0.7 1,129,966 - SM_b21589 0.44 -0.7 1,130,174 + SM_b21589 0.64 -1.2 1,130,174 + SM_b21589 0.64 +0.2 1,130,175 - SM_b21589 0.64 -0.1 1,130,175 - SM_b21589 0.64 -1.1 1,130,259 + SM_b21589 0.73 +1.2 1,130,259 + SM_b21589 0.73 +0.7 1,130,260 - SM_b21589 0.73 +0.8 1,130,260 - SM_b21589 0.73 -0.5
Or see this region's nucleotide sequence