Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21425

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21424 and SM_b21425 are separated by 46 nucleotidesSM_b21425 and SM_b21426 are separated by 1 nucleotidesSM_b21426 and SM_b21427 overlap by 1 nucleotides SM_b21424: SM_b21424 - esterase or acylase, at 1,355,223 to 1,356,959 _b21424 SM_b21425: SM_b21425 - hypothetical protein, at 1,357,006 to 1,357,782 _b21425 SM_b21426: SM_b21426 - sugar nucleotide oxidoreductaseepimerase, at 1,357,784 to 1,358,626 _b21426 SM_b21427: SM_b21427 - acetyltransferase, at 1,358,626 to 1,359,114 _b21427 Position (kb) 1357 1358Strain fitness (log2 ratio) -2 -1 0 1 2at 1356.069 kb on + strand, within SM_b21424at 1356.069 kb on + strand, within SM_b21424at 1356.070 kb on - strand, within SM_b21424at 1356.070 kb on - strand, within SM_b21424at 1356.092 kb on - strand, within SM_b21424at 1356.548 kb on - strand, within SM_b21424at 1356.548 kb on - strand, within SM_b21424at 1356.921 kb on + strandat 1356.921 kb on + strandat 1356.922 kb on - strandat 1356.957 kb on + strandat 1356.958 kb on - strandat 1356.962 kb on + strandat 1356.962 kb on + strandat 1356.962 kb on + strandat 1356.962 kb on + strandat 1356.963 kb on - strandat 1356.963 kb on - strandat 1357.100 kb on + strand, within SM_b21425at 1357.100 kb on + strand, within SM_b21425at 1357.202 kb on + strand, within SM_b21425at 1357.229 kb on + strand, within SM_b21425at 1357.263 kb on + strand, within SM_b21425at 1357.263 kb on + strand, within SM_b21425at 1357.264 kb on - strand, within SM_b21425at 1357.264 kb on - strand, within SM_b21425at 1357.282 kb on + strand, within SM_b21425at 1357.282 kb on + strand, within SM_b21425at 1357.283 kb on - strand, within SM_b21425at 1357.283 kb on - strand, within SM_b21425at 1357.283 kb on - strand, within SM_b21425at 1357.283 kb on - strand, within SM_b21425at 1357.283 kb on - strand, within SM_b21425at 1357.656 kb on + strand, within SM_b21425at 1357.656 kb on + strand, within SM_b21425at 1357.657 kb on - strand, within SM_b21425at 1357.657 kb on - strand, within SM_b21425at 1357.664 kb on + strand, within SM_b21425at 1357.664 kb on + strand, within SM_b21425at 1357.664 kb on + strand, within SM_b21425at 1357.678 kb on - strand, within SM_b21425at 1357.865 kb on + strandat 1357.958 kb on + strand, within SM_b21426at 1357.959 kb on - strand, within SM_b21426at 1358.034 kb on + strand, within SM_b21426at 1358.034 kb on + strand, within SM_b21426at 1358.034 kb on + strand, within SM_b21426at 1358.035 kb on - strand, within SM_b21426at 1358.099 kb on - strand, within SM_b21426at 1358.100 kb on + strand, within SM_b21426at 1358.100 kb on + strand, within SM_b21426at 1358.101 kb on - strand, within SM_b21426at 1358.101 kb on - strand, within SM_b21426at 1358.289 kb on + strand, within SM_b21426at 1358.289 kb on + strand, within SM_b21426at 1358.289 kb on + strand, within SM_b21426at 1358.341 kb on + strand, within SM_b21426at 1358.342 kb on - strand, within SM_b21426at 1358.359 kb on - strand, within SM_b21426at 1358.379 kb on + strand, within SM_b21426at 1358.379 kb on + strandat 1358.380 kb on - strand, within SM_b21426at 1358.380 kb on - strand, within SM_b21426at 1358.380 kb on - strand, within SM_b21426at 1358.380 kb on - strand, within SM_b21426at 1358.490 kb on + strand, within SM_b21426at 1358.490 kb on + strand, within SM_b21426at 1358.490 kb on + strand, within SM_b21426at 1358.490 kb on + strand, within SM_b21426at 1358.490 kb on + strand, within SM_b21426at 1358.527 kb on + strand, within SM_b21426at 1358.527 kb on + strand, within SM_b21426

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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1,356,069 + SM_b21424 0.49 +1.2
1,356,069 + SM_b21424 0.49 +0.1
1,356,070 - SM_b21424 0.49 +0.7
1,356,070 - SM_b21424 0.49 +0.4
1,356,092 - SM_b21424 0.50 -1.8
1,356,548 - SM_b21424 0.76 +0.0
1,356,548 - SM_b21424 0.76 +0.5
1,356,921 + -0.0
1,356,921 + -0.3
1,356,922 - +0.5
1,356,957 + -0.2
1,356,958 - +2.1
1,356,962 + -0.2
1,356,962 + -0.0
1,356,962 + +0.1
1,356,962 + -0.4
1,356,963 - +0.2
1,356,963 - -1.3
1,357,100 + SM_b21425 0.12 -1.1
1,357,100 + SM_b21425 0.12 +1.1
1,357,202 + SM_b21425 0.25 +0.3
1,357,229 + SM_b21425 0.29 +0.5
1,357,263 + SM_b21425 0.33 +2.0
1,357,263 + SM_b21425 0.33 +0.2
1,357,264 - SM_b21425 0.33 -0.3
1,357,264 - SM_b21425 0.33 -1.3
1,357,282 + SM_b21425 0.36 -0.0
1,357,282 + SM_b21425 0.36 +1.1
1,357,283 - SM_b21425 0.36 +0.0
1,357,283 - SM_b21425 0.36 +0.1
1,357,283 - SM_b21425 0.36 +0.5
1,357,283 - SM_b21425 0.36 +0.7
1,357,283 - SM_b21425 0.36 -0.6
1,357,656 + SM_b21425 0.84 -0.0
1,357,656 + SM_b21425 0.84 -0.6
1,357,657 - SM_b21425 0.84 +0.4
1,357,657 - SM_b21425 0.84 +0.5
1,357,664 + SM_b21425 0.85 +0.4
1,357,664 + SM_b21425 0.85 +0.4
1,357,664 + SM_b21425 0.85 -0.4
1,357,678 - SM_b21425 0.86 +0.7
1,357,865 + +1.0
1,357,958 + SM_b21426 0.21 +0.2
1,357,959 - SM_b21426 0.21 +0.4
1,358,034 + SM_b21426 0.30 +0.1
1,358,034 + SM_b21426 0.30 -0.0
1,358,034 + SM_b21426 0.30 +1.4
1,358,035 - SM_b21426 0.30 -1.3
1,358,099 - SM_b21426 0.37 +0.4
1,358,100 + SM_b21426 0.37 -0.3
1,358,100 + SM_b21426 0.37 +1.1
1,358,101 - SM_b21426 0.38 -0.0
1,358,101 - SM_b21426 0.38 +0.3
1,358,289 + SM_b21426 0.60 -0.8
1,358,289 + SM_b21426 0.60 +0.1
1,358,289 + SM_b21426 0.60 +0.9
1,358,341 + SM_b21426 0.66 -0.7
1,358,342 - SM_b21426 0.66 -1.7
1,358,359 - SM_b21426 0.68 -0.6
1,358,379 + SM_b21426 0.71 +0.1
1,358,379 + +0.0
1,358,380 - SM_b21426 0.71 +0.1
1,358,380 - SM_b21426 0.71 -0.0
1,358,380 - SM_b21426 0.71 -1.8
1,358,380 - SM_b21426 0.71 +0.4
1,358,490 + SM_b21426 0.84 +0.2
1,358,490 + SM_b21426 0.84 +1.2
1,358,490 + SM_b21426 0.84 +2.0
1,358,490 + SM_b21426 0.84 -0.1
1,358,490 + SM_b21426 0.84 +0.4
1,358,527 + SM_b21426 0.88 +0.5
1,358,527 + SM_b21426 0.88 -0.4

Or see this region's nucleotide sequence