Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21406

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21404 and SM_b21405 overlap by 13 nucleotidesSM_b21405 and SM_b21406 are separated by 169 nucleotidesSM_b21406 and SM_b21407 are separated by 11 nucleotidesSM_b21407 and SM_b21408 are separated by 105 nucleotides SM_b21404: SM_b21404 - hypothetical protein, at 1,335,895 to 1,336,335 _b21404 SM_b21405: SM_b21405 - isochorismatase, at 1,336,323 to 1,336,976 _b21405 SM_b21406: SM_b21406 - hypothetical protein, at 1,337,146 to 1,338,030 _b21406 SM_b21407: SM_b21407 - hypothetical protein, at 1,338,042 to 1,338,860 _b21407 SM_b21408: SM_b21408 - LysR family transcriptional regulator, at 1,338,966 to 1,339,325 _b21408 Position (kb) 1337 1338 1339Strain fitness (log2 ratio) -2 -1 0 1 2at 1336.167 kb on - strand, within SM_b21404at 1336.176 kb on + strand, within SM_b21404at 1336.177 kb on - strand, within SM_b21404at 1336.177 kb on - strand, within SM_b21404at 1336.205 kb on + strand, within SM_b21404at 1336.206 kb on - strand, within SM_b21404at 1336.206 kb on - strand, within SM_b21404at 1336.206 kb on - strand, within SM_b21404at 1336.367 kb on + strandat 1336.431 kb on + strand, within SM_b21405at 1336.432 kb on - strand, within SM_b21405at 1336.708 kb on + strand, within SM_b21405at 1336.709 kb on - strand, within SM_b21405at 1336.709 kb on - strand, within SM_b21405at 1337.065 kb on - strandat 1337.179 kb on + strandat 1337.218 kb on + strandat 1337.219 kb on - strandat 1337.219 kb on - strandat 1337.221 kb on - strandat 1337.372 kb on - strand, within SM_b21406at 1337.372 kb on - strand, within SM_b21406at 1337.488 kb on + strand, within SM_b21406at 1337.489 kb on - strand, within SM_b21406at 1337.491 kb on + strand, within SM_b21406at 1337.492 kb on - strand, within SM_b21406at 1337.659 kb on + strand, within SM_b21406at 1337.659 kb on + strand, within SM_b21406at 1338.028 kb on + strandat 1338.028 kb on + strandat 1338.028 kb on + strandat 1338.028 kb on + strandat 1338.029 kb on - strandat 1338.073 kb on - strandat 1338.189 kb on + strand, within SM_b21407at 1338.190 kb on - strand, within SM_b21407at 1338.243 kb on + strand, within SM_b21407at 1338.243 kb on + strand, within SM_b21407at 1338.384 kb on + strand, within SM_b21407at 1338.385 kb on - strand, within SM_b21407at 1338.390 kb on - strand, within SM_b21407at 1338.390 kb on - strand, within SM_b21407at 1338.445 kb on + strand, within SM_b21407at 1338.445 kb on + strand, within SM_b21407at 1338.508 kb on + strand, within SM_b21407at 1338.508 kb on + strand, within SM_b21407at 1338.508 kb on + strand, within SM_b21407at 1338.508 kb on + strand, within SM_b21407at 1338.508 kb on + strand, within SM_b21407at 1338.536 kb on - strand, within SM_b21407at 1338.579 kb on + strand, within SM_b21407at 1338.579 kb on + strand, within SM_b21407at 1338.579 kb on + strand, within SM_b21407at 1338.579 kb on + strand, within SM_b21407at 1338.580 kb on - strand, within SM_b21407at 1338.580 kb on - strand, within SM_b21407at 1338.580 kb on - strand, within SM_b21407at 1338.713 kb on + strand, within SM_b21407at 1338.714 kb on - strand, within SM_b21407at 1338.746 kb on - strand, within SM_b21407at 1338.746 kb on - strand, within SM_b21407at 1338.858 kb on + strandat 1338.858 kb on + strandat 1338.880 kb on + strandat 1338.880 kb on + strandat 1338.881 kb on - strandat 1338.881 kb on - strandat 1338.921 kb on + strandat 1338.921 kb on + strandat 1338.922 kb on - strandat 1338.936 kb on + strandat 1338.936 kb on + strandat 1338.936 kb on + strandat 1338.995 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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1,336,167 - SM_b21404 0.62 -0.3
1,336,176 + SM_b21404 0.64 -0.2
1,336,177 - SM_b21404 0.64 -0.1
1,336,177 - SM_b21404 0.64 -0.9
1,336,205 + SM_b21404 0.70 +0.9
1,336,206 - SM_b21404 0.71 -1.7
1,336,206 - SM_b21404 0.71 -0.2
1,336,206 - SM_b21404 0.71 +0.0
1,336,367 + -0.1
1,336,431 + SM_b21405 0.17 -1.8
1,336,432 - SM_b21405 0.17 +0.9
1,336,708 + SM_b21405 0.59 +0.1
1,336,709 - SM_b21405 0.59 -0.2
1,336,709 - SM_b21405 0.59 +1.0
1,337,065 - -0.8
1,337,179 + +0.2
1,337,218 + -0.2
1,337,219 - -1.2
1,337,219 - -1.8
1,337,221 - -1.0
1,337,372 - SM_b21406 0.26 +0.8
1,337,372 - SM_b21406 0.26 +0.0
1,337,488 + SM_b21406 0.39 +0.7
1,337,489 - SM_b21406 0.39 -0.1
1,337,491 + SM_b21406 0.39 -0.5
1,337,492 - SM_b21406 0.39 +0.3
1,337,659 + SM_b21406 0.58 +2.0
1,337,659 + SM_b21406 0.58 -0.0
1,338,028 + -0.4
1,338,028 + -0.4
1,338,028 + +2.2
1,338,028 + +0.1
1,338,029 - +0.3
1,338,073 - -0.5
1,338,189 + SM_b21407 0.18 +1.8
1,338,190 - SM_b21407 0.18 +0.4
1,338,243 + SM_b21407 0.25 -0.0
1,338,243 + SM_b21407 0.25 +1.6
1,338,384 + SM_b21407 0.42 -0.6
1,338,385 - SM_b21407 0.42 -0.1
1,338,390 - SM_b21407 0.42 -0.0
1,338,390 - SM_b21407 0.42 +2.2
1,338,445 + SM_b21407 0.49 +0.2
1,338,445 + SM_b21407 0.49 -1.0
1,338,508 + SM_b21407 0.57 -0.1
1,338,508 + SM_b21407 0.57 +0.0
1,338,508 + SM_b21407 0.57 +1.2
1,338,508 + SM_b21407 0.57 -0.5
1,338,508 + SM_b21407 0.57 +0.5
1,338,536 - SM_b21407 0.60 -1.5
1,338,579 + SM_b21407 0.66 -0.2
1,338,579 + SM_b21407 0.66 +1.0
1,338,579 + SM_b21407 0.66 +0.4
1,338,579 + SM_b21407 0.66 -0.4
1,338,580 - SM_b21407 0.66 +0.4
1,338,580 - SM_b21407 0.66 +1.0
1,338,580 - SM_b21407 0.66 +1.6
1,338,713 + SM_b21407 0.82 -2.7
1,338,714 - SM_b21407 0.82 -0.4
1,338,746 - SM_b21407 0.86 -0.6
1,338,746 - SM_b21407 0.86 -0.4
1,338,858 + +0.4
1,338,858 + -0.7
1,338,880 + -0.7
1,338,880 + +0.9
1,338,881 - -0.6
1,338,881 - -1.1
1,338,921 + -0.4
1,338,921 + -0.1
1,338,922 - +0.4
1,338,936 + +1.0
1,338,936 + +1.2
1,338,936 + -0.2
1,338,995 - +0.4

Or see this region's nucleotide sequence