Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21404 and SM_b21405 overlap by 13 nucleotides SM_b21405 and SM_b21406 are separated by 169 nucleotides SM_b21406 and SM_b21407 are separated by 11 nucleotides SM_b21407 and SM_b21408 are separated by 105 nucleotides
SM_b21404: SM_b21404 - hypothetical protein, at 1,335,895 to 1,336,335
_b21404
SM_b21405: SM_b21405 - isochorismatase, at 1,336,323 to 1,336,976
_b21405
SM_b21406: SM_b21406 - hypothetical protein, at 1,337,146 to 1,338,030
_b21406
SM_b21407: SM_b21407 - hypothetical protein, at 1,338,042 to 1,338,860
_b21407
SM_b21408: SM_b21408 - LysR family transcriptional regulator, at 1,338,966 to 1,339,325
_b21408
Position (kb)
1337
1338
1339 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1336.167 kb on - strand, within SM_b21404 at 1336.176 kb on + strand, within SM_b21404 at 1336.177 kb on - strand, within SM_b21404 at 1336.177 kb on - strand, within SM_b21404 at 1336.205 kb on + strand, within SM_b21404 at 1336.206 kb on - strand, within SM_b21404 at 1336.206 kb on - strand, within SM_b21404 at 1336.206 kb on - strand, within SM_b21404 at 1336.367 kb on + strand at 1336.431 kb on + strand, within SM_b21405 at 1336.432 kb on - strand, within SM_b21405 at 1336.708 kb on + strand, within SM_b21405 at 1336.709 kb on - strand, within SM_b21405 at 1336.709 kb on - strand, within SM_b21405 at 1337.065 kb on - strand at 1337.179 kb on + strand at 1337.218 kb on + strand at 1337.219 kb on - strand at 1337.219 kb on - strand at 1337.221 kb on - strand at 1337.372 kb on - strand, within SM_b21406 at 1337.372 kb on - strand, within SM_b21406 at 1337.488 kb on + strand, within SM_b21406 at 1337.489 kb on - strand, within SM_b21406 at 1337.491 kb on + strand, within SM_b21406 at 1337.492 kb on - strand, within SM_b21406 at 1337.659 kb on + strand, within SM_b21406 at 1337.659 kb on + strand, within SM_b21406 at 1338.028 kb on + strand at 1338.028 kb on + strand at 1338.028 kb on + strand at 1338.028 kb on + strand at 1338.029 kb on - strand at 1338.073 kb on - strand at 1338.189 kb on + strand, within SM_b21407 at 1338.190 kb on - strand, within SM_b21407 at 1338.243 kb on + strand, within SM_b21407 at 1338.243 kb on + strand, within SM_b21407 at 1338.384 kb on + strand, within SM_b21407 at 1338.385 kb on - strand, within SM_b21407 at 1338.390 kb on - strand, within SM_b21407 at 1338.390 kb on - strand, within SM_b21407 at 1338.445 kb on + strand, within SM_b21407 at 1338.445 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.536 kb on - strand, within SM_b21407 at 1338.579 kb on + strand, within SM_b21407 at 1338.579 kb on + strand, within SM_b21407 at 1338.579 kb on + strand, within SM_b21407 at 1338.579 kb on + strand, within SM_b21407 at 1338.580 kb on - strand, within SM_b21407 at 1338.580 kb on - strand, within SM_b21407 at 1338.580 kb on - strand, within SM_b21407 at 1338.713 kb on + strand, within SM_b21407 at 1338.714 kb on - strand, within SM_b21407 at 1338.746 kb on - strand, within SM_b21407 at 1338.746 kb on - strand, within SM_b21407 at 1338.858 kb on + strand at 1338.858 kb on + strand at 1338.880 kb on + strand at 1338.880 kb on + strand at 1338.881 kb on - strand at 1338.881 kb on - strand at 1338.921 kb on + strand at 1338.921 kb on + strand at 1338.922 kb on - strand at 1338.936 kb on + strand at 1338.936 kb on + strand at 1338.936 kb on + strand at 1338.995 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 1,336,167 - SM_b21404 0.62 -0.3 1,336,176 + SM_b21404 0.64 -0.2 1,336,177 - SM_b21404 0.64 -0.1 1,336,177 - SM_b21404 0.64 -0.9 1,336,205 + SM_b21404 0.70 +0.9 1,336,206 - SM_b21404 0.71 -1.7 1,336,206 - SM_b21404 0.71 -0.2 1,336,206 - SM_b21404 0.71 +0.0 1,336,367 + -0.1 1,336,431 + SM_b21405 0.17 -1.8 1,336,432 - SM_b21405 0.17 +0.9 1,336,708 + SM_b21405 0.59 +0.1 1,336,709 - SM_b21405 0.59 -0.2 1,336,709 - SM_b21405 0.59 +1.0 1,337,065 - -0.8 1,337,179 + +0.2 1,337,218 + -0.2 1,337,219 - -1.2 1,337,219 - -1.8 1,337,221 - -1.0 1,337,372 - SM_b21406 0.26 +0.8 1,337,372 - SM_b21406 0.26 +0.0 1,337,488 + SM_b21406 0.39 +0.7 1,337,489 - SM_b21406 0.39 -0.1 1,337,491 + SM_b21406 0.39 -0.5 1,337,492 - SM_b21406 0.39 +0.3 1,337,659 + SM_b21406 0.58 +2.0 1,337,659 + SM_b21406 0.58 -0.0 1,338,028 + -0.4 1,338,028 + -0.4 1,338,028 + +2.2 1,338,028 + +0.1 1,338,029 - +0.3 1,338,073 - -0.5 1,338,189 + SM_b21407 0.18 +1.8 1,338,190 - SM_b21407 0.18 +0.4 1,338,243 + SM_b21407 0.25 -0.0 1,338,243 + SM_b21407 0.25 +1.6 1,338,384 + SM_b21407 0.42 -0.6 1,338,385 - SM_b21407 0.42 -0.1 1,338,390 - SM_b21407 0.42 -0.0 1,338,390 - SM_b21407 0.42 +2.2 1,338,445 + SM_b21407 0.49 +0.2 1,338,445 + SM_b21407 0.49 -1.0 1,338,508 + SM_b21407 0.57 -0.1 1,338,508 + SM_b21407 0.57 +0.0 1,338,508 + SM_b21407 0.57 +1.2 1,338,508 + SM_b21407 0.57 -0.5 1,338,508 + SM_b21407 0.57 +0.5 1,338,536 - SM_b21407 0.60 -1.5 1,338,579 + SM_b21407 0.66 -0.2 1,338,579 + SM_b21407 0.66 +1.0 1,338,579 + SM_b21407 0.66 +0.4 1,338,579 + SM_b21407 0.66 -0.4 1,338,580 - SM_b21407 0.66 +0.4 1,338,580 - SM_b21407 0.66 +1.0 1,338,580 - SM_b21407 0.66 +1.6 1,338,713 + SM_b21407 0.82 -2.7 1,338,714 - SM_b21407 0.82 -0.4 1,338,746 - SM_b21407 0.86 -0.6 1,338,746 - SM_b21407 0.86 -0.4 1,338,858 + +0.4 1,338,858 + -0.7 1,338,880 + -0.7 1,338,880 + +0.9 1,338,881 - -0.6 1,338,881 - -1.1 1,338,921 + -0.4 1,338,921 + -0.1 1,338,922 - +0.4 1,338,936 + +1.0 1,338,936 + +1.2 1,338,936 + -0.2 1,338,995 - +0.4
Or see this region's nucleotide sequence