Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21364

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21363 and SM_b21364 are separated by 8 nucleotidesSM_b21364 and SM_b21365 overlap by 8 nucleotidesSM_b21365 and SM_b21669 overlap by 19 nucleotidesSM_b21669 and SM_b21366 are separated by 40 nucleotides SM_b21363: SM_b21363 - hypothetical protein, at 1,026,537 to 1,027,631 _b21363 SM_b21364: SM_b21364 - membrane-anchored oxidoreductase, L-sorbosone dehydrogenase, at 1,027,640 to 1,029,193 _b21364 SM_b21365: SM_b21365 - hypothetical protein, at 1,029,186 to 1,029,638 _b21365 SM_b21669: SM_b21669 - hypothetical protein, at 1,029,620 to 1,029,847 _b21669 SM_b21366: SM_b21366 - hypothetical protein, at 1,029,888 to 1,030,469 _b21366 Position (kb) 1027 1028 1029 1030Strain fitness (log2 ratio) -2 -1 0 1 2at 1026.823 kb on - strand, within SM_b21363at 1026.823 kb on - strand, within SM_b21363at 1026.839 kb on - strand, within SM_b21363at 1026.870 kb on + strand, within SM_b21363at 1026.871 kb on - strand, within SM_b21363at 1026.871 kb on - strand, within SM_b21363at 1026.911 kb on + strand, within SM_b21363at 1026.911 kb on + strand, within SM_b21363at 1026.912 kb on - strand, within SM_b21363at 1026.912 kb on - strand, within SM_b21363at 1026.912 kb on - strand, within SM_b21363at 1027.015 kb on + strand, within SM_b21363at 1027.083 kb on - strand, within SM_b21363at 1027.083 kb on - strand, within SM_b21363at 1027.253 kb on - strand, within SM_b21363at 1027.303 kb on - strand, within SM_b21363at 1027.346 kb on + strand, within SM_b21363at 1027.405 kb on - strand, within SM_b21363at 1027.407 kb on + strand, within SM_b21363at 1027.407 kb on + strand, within SM_b21363at 1027.407 kb on + strand, within SM_b21363at 1027.407 kb on + strand, within SM_b21363at 1027.428 kb on + strand, within SM_b21363at 1027.428 kb on + strand, within SM_b21363at 1027.429 kb on - strand, within SM_b21363at 1027.440 kb on + strand, within SM_b21363at 1027.440 kb on + strand, within SM_b21363at 1027.440 kb on + strand, within SM_b21363at 1027.440 kb on + strand, within SM_b21363at 1027.441 kb on - strand, within SM_b21363at 1027.441 kb on - strand, within SM_b21363at 1027.441 kb on - strand, within SM_b21363at 1027.596 kb on + strandat 1027.596 kb on + strandat 1027.596 kb on + strandat 1027.596 kb on + strandat 1027.597 kb on - strandat 1027.597 kb on - strandat 1027.597 kb on - strandat 1027.597 kb on - strandat 1027.597 kb on - strandat 1027.597 kb on - strandat 1027.630 kb on - strandat 1027.641 kb on + strandat 1027.641 kb on + strandat 1027.729 kb on + strandat 1027.730 kb on - strandat 1028.028 kb on + strand, within SM_b21364at 1028.028 kb on + strand, within SM_b21364at 1028.029 kb on - strand, within SM_b21364at 1028.029 kb on - strand, within SM_b21364at 1028.029 kb on - strand, within SM_b21364at 1028.040 kb on + strand, within SM_b21364at 1028.041 kb on - strand, within SM_b21364at 1028.041 kb on - strand, within SM_b21364at 1028.081 kb on + strand, within SM_b21364at 1028.082 kb on - strand, within SM_b21364at 1028.170 kb on - strand, within SM_b21364at 1028.170 kb on - strand, within SM_b21364at 1028.244 kb on + strand, within SM_b21364at 1028.244 kb on + strand, within SM_b21364at 1028.245 kb on - strand, within SM_b21364at 1028.263 kb on - strand, within SM_b21364at 1028.263 kb on - strand, within SM_b21364at 1028.263 kb on - strand, within SM_b21364at 1028.263 kb on - strand, within SM_b21364at 1028.263 kb on - strand, within SM_b21364at 1028.433 kb on - strand, within SM_b21364at 1028.433 kb on - strand, within SM_b21364at 1028.484 kb on - strand, within SM_b21364at 1028.511 kb on + strand, within SM_b21364at 1028.512 kb on - strand, within SM_b21364at 1028.587 kb on + strand, within SM_b21364at 1028.631 kb on + strand, within SM_b21364at 1028.637 kb on + strand, within SM_b21364at 1028.638 kb on - strand, within SM_b21364at 1028.667 kb on + strand, within SM_b21364at 1028.667 kb on + strand, within SM_b21364at 1028.668 kb on - strand, within SM_b21364at 1028.668 kb on - strand, within SM_b21364at 1028.668 kb on - strand, within SM_b21364at 1028.668 kb on - strand, within SM_b21364at 1028.668 kb on - strand, within SM_b21364at 1028.921 kb on - strand, within SM_b21364at 1029.187 kb on + strandat 1029.187 kb on + strandat 1029.187 kb on + strandat 1029.188 kb on - strandat 1029.441 kb on + strand, within SM_b21365at 1029.442 kb on - strand, within SM_b21365at 1029.554 kb on + strand, within SM_b21365at 1029.682 kb on + strand, within SM_b21669at 1029.683 kb on - strand, within SM_b21669at 1029.683 kb on - strand, within SM_b21669at 1029.683 kb on - strand, within SM_b21669at 1029.908 kb on + strandat 1029.908 kb on + strandat 1029.909 kb on - strandat 1029.909 kb on - strandat 1029.909 kb on - strandat 1029.909 kb on - strandat 1029.909 kb on - strandat 1029.920 kb on + strandat 1029.921 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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1,026,823 - SM_b21363 0.26 -0.7
1,026,823 - SM_b21363 0.26 -0.0
1,026,839 - SM_b21363 0.28 +0.6
1,026,870 + SM_b21363 0.30 +0.8
1,026,871 - SM_b21363 0.31 -0.1
1,026,871 - SM_b21363 0.31 +0.9
1,026,911 + SM_b21363 0.34 -0.2
1,026,911 + SM_b21363 0.34 +0.1
1,026,912 - SM_b21363 0.34 +0.1
1,026,912 - SM_b21363 0.34 -0.5
1,026,912 - SM_b21363 0.34 +1.4
1,027,015 + SM_b21363 0.44 -0.5
1,027,083 - SM_b21363 0.50 -0.6
1,027,083 - SM_b21363 0.50 +1.2
1,027,253 - SM_b21363 0.65 +0.4
1,027,303 - SM_b21363 0.70 -0.4
1,027,346 + SM_b21363 0.74 +0.9
1,027,405 - SM_b21363 0.79 +0.5
1,027,407 + SM_b21363 0.79 -1.4
1,027,407 + SM_b21363 0.79 -0.2
1,027,407 + SM_b21363 0.79 -0.0
1,027,407 + SM_b21363 0.79 +0.6
1,027,428 + SM_b21363 0.81 +0.5
1,027,428 + SM_b21363 0.81 -0.6
1,027,429 - SM_b21363 0.81 -1.1
1,027,440 + SM_b21363 0.82 +0.1
1,027,440 + SM_b21363 0.82 +0.3
1,027,440 + SM_b21363 0.82 -0.6
1,027,440 + SM_b21363 0.82 -0.1
1,027,441 - SM_b21363 0.83 +0.7
1,027,441 - SM_b21363 0.83 +1.2
1,027,441 - SM_b21363 0.83 +0.7
1,027,596 + -0.3
1,027,596 + +0.3
1,027,596 + +0.4
1,027,596 + -0.0
1,027,597 - -1.0
1,027,597 - -0.7
1,027,597 - +0.4
1,027,597 - -0.3
1,027,597 - -0.5
1,027,597 - +0.3
1,027,630 - -0.1
1,027,641 + -0.1
1,027,641 + -0.6
1,027,729 + -0.4
1,027,730 - +0.1
1,028,028 + SM_b21364 0.25 -1.4
1,028,028 + SM_b21364 0.25 +0.8
1,028,029 - SM_b21364 0.25 -1.4
1,028,029 - SM_b21364 0.25 +0.3
1,028,029 - SM_b21364 0.25 +0.3
1,028,040 + SM_b21364 0.26 -0.4
1,028,041 - SM_b21364 0.26 -1.5
1,028,041 - SM_b21364 0.26 +0.7
1,028,081 + SM_b21364 0.28 +0.7
1,028,082 - SM_b21364 0.28 -0.1
1,028,170 - SM_b21364 0.34 +0.3
1,028,170 - SM_b21364 0.34 -0.1
1,028,244 + SM_b21364 0.39 -0.2
1,028,244 + SM_b21364 0.39 +0.6
1,028,245 - SM_b21364 0.39 -1.0
1,028,263 - SM_b21364 0.40 -0.9
1,028,263 - SM_b21364 0.40 -1.7
1,028,263 - SM_b21364 0.40 +0.4
1,028,263 - SM_b21364 0.40 -0.9
1,028,263 - SM_b21364 0.40 -0.7
1,028,433 - SM_b21364 0.51 -0.1
1,028,433 - SM_b21364 0.51 +0.3
1,028,484 - SM_b21364 0.54 -1.2
1,028,511 + SM_b21364 0.56 -0.8
1,028,512 - SM_b21364 0.56 +0.0
1,028,587 + SM_b21364 0.61 -0.5
1,028,631 + SM_b21364 0.64 -0.4
1,028,637 + SM_b21364 0.64 -0.3
1,028,638 - SM_b21364 0.64 -0.9
1,028,667 + SM_b21364 0.66 +0.3
1,028,667 + SM_b21364 0.66 -1.2
1,028,668 - SM_b21364 0.66 -0.5
1,028,668 - SM_b21364 0.66 -0.6
1,028,668 - SM_b21364 0.66 -0.6
1,028,668 - SM_b21364 0.66 +1.3
1,028,668 - SM_b21364 0.66 -1.3
1,028,921 - SM_b21364 0.82 +0.2
1,029,187 + -2.3
1,029,187 + +0.3
1,029,187 + +0.6
1,029,188 - -0.5
1,029,441 + SM_b21365 0.56 -0.3
1,029,442 - SM_b21365 0.57 +0.4
1,029,554 + SM_b21365 0.81 +1.5
1,029,682 + SM_b21669 0.27 -0.2
1,029,683 - SM_b21669 0.28 +0.4
1,029,683 - SM_b21669 0.28 +0.9
1,029,683 - SM_b21669 0.28 +1.2
1,029,908 + -0.3
1,029,908 + +1.8
1,029,909 - +0.3
1,029,909 - +0.1
1,029,909 - -0.3
1,029,909 - +0.5
1,029,909 - +0.4
1,029,920 + -0.1
1,029,921 - +0.4

Or see this region's nucleotide sequence