Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21308

Experiment: LB, pH6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21307 and SM_b21308 are separated by 44 nucleotidesSM_b21308 and SM_b21309 overlap by 4 nucleotides SM_b21307: SM_b21307 - hypothetical protein, at 969,820 to 970,797 _b21307 SM_b21308: SM_b21308 - glycosyltransferase, forming alpha glycosyl linkages protein, at 970,842 to 972,164 _b21308 SM_b21309: SM_b21309 - hypothetical protein, at 972,161 to 974,377 _b21309 Position (kb) 970 971 972 973Strain fitness (log2 ratio) -2 -1 0 1 2at 969.853 kb on - strandat 970.010 kb on + strand, within SM_b21307at 970.011 kb on - strand, within SM_b21307at 970.011 kb on - strand, within SM_b21307at 970.115 kb on + strand, within SM_b21307at 970.254 kb on + strand, within SM_b21307at 970.254 kb on + strand, within SM_b21307at 970.254 kb on + strand, within SM_b21307at 970.254 kb on + strand, within SM_b21307at 970.254 kb on + strand, within SM_b21307at 970.254 kb on + strand, within SM_b21307at 970.254 kb on + strand, within SM_b21307at 970.255 kb on - strand, within SM_b21307at 970.255 kb on - strand, within SM_b21307at 970.255 kb on - strand, within SM_b21307at 970.255 kb on - strand, within SM_b21307at 970.338 kb on - strand, within SM_b21307at 970.338 kb on - strand, within SM_b21307at 970.346 kb on + strand, within SM_b21307at 970.347 kb on - strand, within SM_b21307at 970.435 kb on + strand, within SM_b21307at 970.435 kb on + strand, within SM_b21307at 970.541 kb on + strand, within SM_b21307at 970.542 kb on - strand, within SM_b21307at 970.762 kb on + strandat 970.763 kb on - strandat 970.788 kb on - strandat 970.843 kb on + strandat 970.870 kb on + strandat 970.871 kb on - strandat 971.434 kb on + strand, within SM_b21308at 971.478 kb on + strand, within SM_b21308at 971.479 kb on - strand, within SM_b21308at 971.540 kb on + strand, within SM_b21308at 971.755 kb on + strand, within SM_b21308at 971.755 kb on + strand, within SM_b21308at 971.809 kb on + strand, within SM_b21308at 972.037 kb on + strandat 972.037 kb on + strandat 972.038 kb on - strandat 972.038 kb on - strandat 972.040 kb on - strandat 972.040 kb on - strandat 972.074 kb on + strandat 972.075 kb on - strandat 972.093 kb on + strandat 972.391 kb on - strand, within SM_b21309at 972.514 kb on - strand, within SM_b21309at 972.586 kb on - strand, within SM_b21309at 972.645 kb on + strand, within SM_b21309at 972.735 kb on + strand, within SM_b21309at 972.736 kb on - strand, within SM_b21309at 972.736 kb on - strand, within SM_b21309

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
remove
969,853 - +2.0
970,010 + SM_b21307 0.19 +0.1
970,011 - SM_b21307 0.20 -0.1
970,011 - SM_b21307 0.20 +0.1
970,115 + SM_b21307 0.30 -0.7
970,254 + SM_b21307 0.44 -0.1
970,254 + SM_b21307 0.44 +1.7
970,254 + SM_b21307 0.44 +1.0
970,254 + SM_b21307 0.44 +0.5
970,254 + SM_b21307 0.44 -1.2
970,254 + SM_b21307 0.44 +0.5
970,254 + SM_b21307 0.44 +0.6
970,255 - SM_b21307 0.44 +0.2
970,255 - SM_b21307 0.44 -0.8
970,255 - SM_b21307 0.44 -0.0
970,255 - SM_b21307 0.44 +0.2
970,338 - SM_b21307 0.53 -0.5
970,338 - SM_b21307 0.53 +0.2
970,346 + SM_b21307 0.54 -0.3
970,347 - SM_b21307 0.54 +0.4
970,435 + SM_b21307 0.63 +0.8
970,435 + SM_b21307 0.63 -1.1
970,541 + SM_b21307 0.74 -0.2
970,542 - SM_b21307 0.74 +0.5
970,762 + -0.9
970,763 - +0.3
970,788 - +0.2
970,843 + -1.7
970,870 + +0.2
970,871 - +0.2
971,434 + SM_b21308 0.45 -0.7
971,478 + SM_b21308 0.48 +0.8
971,479 - SM_b21308 0.48 -0.5
971,540 + SM_b21308 0.53 +0.1
971,755 + SM_b21308 0.69 +0.1
971,755 + SM_b21308 0.69 -2.3
971,809 + SM_b21308 0.73 -0.8
972,037 + -0.1
972,037 + +0.0
972,038 - -0.0
972,038 - -0.5
972,040 - +0.2
972,040 - +0.1
972,074 + -0.1
972,075 - +0.1
972,093 + +0.2
972,391 - SM_b21309 0.10 +1.2
972,514 - SM_b21309 0.16 -0.3
972,586 - SM_b21309 0.19 +0.8
972,645 + SM_b21309 0.22 -0.7
972,735 + SM_b21309 0.26 +0.6
972,736 - SM_b21309 0.26 -0.9
972,736 - SM_b21309 0.26 +0.0

Or see this region's nucleotide sequence