Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21259

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21257 and SM_b21258 overlap by 34 nucleotidesSM_b21258 and SM_b21259 overlap by 4 nucleotidesSM_b21259 and SM_b21260 are separated by 309 nucleotides SM_b21257: SM_b21257 - adenylate cyclase, at 828,467 to 829,486 _b21257 SM_b21258: SM_b21258 - adenylate cyclase, at 829,453 to 829,815 _b21258 SM_b21259: SM_b21259 - hypothetical protein, at 829,812 to 830,792 _b21259 SM_b21260: SM_b21260 - mureinpeptideoligopeptide ABC transporter ATP-binding protein, at 831,102 to 832,994 _b21260 Position (kb) 829 830 831Strain fitness (log2 ratio) -2 -1 0 1 2at 828.866 kb on + strand, within SM_b21257at 828.866 kb on + strand, within SM_b21257at 828.867 kb on - strand, within SM_b21257at 828.867 kb on - strand, within SM_b21257at 828.870 kb on + strand, within SM_b21257at 828.870 kb on + strand, within SM_b21257at 828.870 kb on + strand, within SM_b21257at 828.871 kb on - strand, within SM_b21257at 828.871 kb on - strand, within SM_b21257at 829.039 kb on + strand, within SM_b21257at 829.039 kb on + strand, within SM_b21257at 829.039 kb on + strand, within SM_b21257at 829.039 kb on + strand, within SM_b21257at 829.040 kb on - strand, within SM_b21257at 829.052 kb on + strand, within SM_b21257at 829.052 kb on + strand, within SM_b21257at 829.052 kb on + strand, within SM_b21257at 829.052 kb on + strand, within SM_b21257at 829.053 kb on - strand, within SM_b21257at 829.053 kb on - strand, within SM_b21257at 829.053 kb on - strand, within SM_b21257at 829.053 kb on - strand, within SM_b21257at 829.081 kb on - strand, within SM_b21257at 829.145 kb on - strand, within SM_b21257at 829.145 kb on - strand, within SM_b21257at 829.190 kb on + strand, within SM_b21257at 829.190 kb on + strand, within SM_b21257at 829.191 kb on - strand, within SM_b21257at 829.191 kb on - strand, within SM_b21257at 829.191 kb on - strand, within SM_b21257at 829.191 kb on - strand, within SM_b21257at 829.192 kb on + strand, within SM_b21257at 829.193 kb on - strand, within SM_b21257at 829.193 kb on - strand, within SM_b21257at 829.193 kb on - strand, within SM_b21257at 829.293 kb on - strand, within SM_b21257at 829.416 kb on + strandat 829.549 kb on + strand, within SM_b21258at 829.549 kb on + strand, within SM_b21258at 829.549 kb on + strand, within SM_b21258at 829.550 kb on - strand, within SM_b21258at 829.660 kb on + strand, within SM_b21258at 829.706 kb on - strand, within SM_b21258at 829.757 kb on - strand, within SM_b21258at 829.835 kb on - strandat 829.835 kb on - strandat 829.875 kb on + strandat 829.875 kb on + strandat 829.875 kb on + strandat 829.875 kb on + strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.937 kb on + strand, within SM_b21259at 829.965 kb on + strand, within SM_b21259at 829.965 kb on + strand, within SM_b21259at 829.965 kb on + strand, within SM_b21259at 829.965 kb on + strand, within SM_b21259at 830.001 kb on + strand, within SM_b21259at 830.001 kb on + strand, within SM_b21259at 830.001 kb on + strand, within SM_b21259at 830.002 kb on - strand, within SM_b21259at 830.002 kb on - strand, within SM_b21259at 830.136 kb on + strand, within SM_b21259at 830.155 kb on - strand, within SM_b21259at 830.168 kb on - strand, within SM_b21259at 830.205 kb on + strand, within SM_b21259at 830.587 kb on + strand, within SM_b21259at 830.587 kb on + strand, within SM_b21259at 830.587 kb on + strand, within SM_b21259at 830.587 kb on + strand, within SM_b21259at 830.588 kb on - strand, within SM_b21259at 830.588 kb on - strand, within SM_b21259at 830.635 kb on + strand, within SM_b21259at 830.635 kb on + strand, within SM_b21259at 830.670 kb on + strand, within SM_b21259at 830.721 kb on + strandat 830.722 kb on - strandat 830.724 kb on + strandat 830.725 kb on - strandat 830.849 kb on + strandat 830.849 kb on + strandat 830.850 kb on - strandat 830.914 kb on - strandat 830.914 kb on - strandat 830.940 kb on + strandat 830.941 kb on - strandat 830.948 kb on + strandat 830.948 kb on + strandat 831.082 kb on - strandat 831.082 kb on - strandat 831.576 kb on + strand, within SM_b21260at 831.577 kb on - strand, within SM_b21260at 831.585 kb on + strand, within SM_b21260at 831.585 kb on + strand, within SM_b21260at 831.586 kb on - strand, within SM_b21260

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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828,866 + SM_b21257 0.39 -1.1
828,866 + SM_b21257 0.39 +1.3
828,867 - SM_b21257 0.39 +0.8
828,867 - SM_b21257 0.39 +1.2
828,870 + SM_b21257 0.40 -0.7
828,870 + SM_b21257 0.40 +0.7
828,870 + SM_b21257 0.40 +0.6
828,871 - SM_b21257 0.40 -0.4
828,871 - SM_b21257 0.40 -0.1
829,039 + SM_b21257 0.56 -0.6
829,039 + SM_b21257 0.56 -0.3
829,039 + SM_b21257 0.56 -1.7
829,039 + SM_b21257 0.56 +1.0
829,040 - SM_b21257 0.56 +0.7
829,052 + SM_b21257 0.57 +0.5
829,052 + SM_b21257 0.57 +0.2
829,052 + SM_b21257 0.57 -0.6
829,052 + SM_b21257 0.57 -0.8
829,053 - SM_b21257 0.57 +0.4
829,053 - SM_b21257 0.57 +0.0
829,053 - SM_b21257 0.57 -1.0
829,053 - SM_b21257 0.57 +0.2
829,081 - SM_b21257 0.60 -0.1
829,145 - SM_b21257 0.66 -0.7
829,145 - SM_b21257 0.66 -0.7
829,190 + SM_b21257 0.71 -0.6
829,190 + SM_b21257 0.71 +0.1
829,191 - SM_b21257 0.71 -0.1
829,191 - SM_b21257 0.71 +0.3
829,191 - SM_b21257 0.71 -0.7
829,191 - SM_b21257 0.71 -1.1
829,192 + SM_b21257 0.71 +0.3
829,193 - SM_b21257 0.71 -0.7
829,193 - SM_b21257 0.71 +0.1
829,193 - SM_b21257 0.71 -2.1
829,293 - SM_b21257 0.81 +0.9
829,416 + -1.0
829,549 + SM_b21258 0.26 -1.4
829,549 + SM_b21258 0.26 -0.1
829,549 + SM_b21258 0.26 +2.1
829,550 - SM_b21258 0.27 +0.8
829,660 + SM_b21258 0.57 +0.0
829,706 - SM_b21258 0.70 -0.2
829,757 - SM_b21258 0.84 -0.5
829,835 - +0.1
829,835 - +2.3
829,875 + -1.4
829,875 + -0.1
829,875 + +0.2
829,875 + -1.3
829,876 - -0.9
829,876 - -1.3
829,876 - -0.6
829,876 - +0.1
829,876 - +0.5
829,876 - -0.2
829,937 + SM_b21259 0.13 +0.0
829,965 + SM_b21259 0.16 -1.8
829,965 + SM_b21259 0.16 -0.8
829,965 + SM_b21259 0.16 +1.2
829,965 + SM_b21259 0.16 -0.4
830,001 + SM_b21259 0.19 -0.3
830,001 + SM_b21259 0.19 -1.0
830,001 + SM_b21259 0.19 -2.6
830,002 - SM_b21259 0.19 -0.4
830,002 - SM_b21259 0.19 +0.3
830,136 + SM_b21259 0.33 -0.9
830,155 - SM_b21259 0.35 -0.9
830,168 - SM_b21259 0.36 -1.1
830,205 + SM_b21259 0.40 +0.1
830,587 + SM_b21259 0.79 +0.4
830,587 + SM_b21259 0.79 -0.5
830,587 + SM_b21259 0.79 -0.3
830,587 + SM_b21259 0.79 -1.6
830,588 - SM_b21259 0.79 -0.2
830,588 - SM_b21259 0.79 +0.5
830,635 + SM_b21259 0.84 -0.1
830,635 + SM_b21259 0.84 -0.6
830,670 + SM_b21259 0.87 -0.0
830,721 + +0.2
830,722 - -1.1
830,724 + +0.1
830,725 - -1.6
830,849 + -1.1
830,849 + +1.0
830,850 - -1.2
830,914 - +0.8
830,914 - -0.1
830,940 + +0.6
830,941 - +0.3
830,948 + -1.4
830,948 + -0.1
831,082 - -0.1
831,082 - +0.1
831,576 + SM_b21260 0.25 +0.0
831,577 - SM_b21260 0.25 +0.4
831,585 + SM_b21260 0.26 +0.6
831,585 + SM_b21260 0.26 -1.2
831,586 - SM_b21260 0.26 +1.4

Or see this region's nucleotide sequence