Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21224 and SM_b21225 overlap by 4 nucleotides SM_b21225 and SM_b21226 are separated by 46 nucleotides SM_b21226 and SM_b21227 overlap by 4 nucleotides
SM_b21224: SM_b21224 - bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase, at 787,536 to 789,437
_b21224
SM_b21225: SM_b21225 - inositol monophosphatase, at 789,434 to 790,273
_b21225
SM_b21226: SM_b21226 - hypothetical protein, at 790,320 to 791,060
_b21226
SM_b21227: SM_b21227 - carbamoyl phosphate synthase-like protein, at 791,057 to 792,049
_b21227
Position (kb) 789
790
791 Strain fitness (log2 ratio) -2
-1
0
1
2 at 788.490 kb on - strand, within SM_b21224 at 788.490 kb on - strand, within SM_b21224 at 788.490 kb on - strand, within SM_b21224 at 788.490 kb on - strand, within SM_b21224 at 789.010 kb on - strand, within SM_b21224 at 789.010 kb on - strand, within SM_b21224 at 789.220 kb on + strand, within SM_b21224 at 789.273 kb on + strand at 789.316 kb on + strand at 789.356 kb on + strand at 789.356 kb on + strand at 789.357 kb on - strand at 789.357 kb on - strand at 789.358 kb on + strand at 789.359 kb on - strand at 789.359 kb on - strand at 789.359 kb on - strand at 789.359 kb on - strand at 789.500 kb on + strand at 789.500 kb on + strand at 789.809 kb on + strand, within SM_b21225 at 789.810 kb on - strand, within SM_b21225 at 789.984 kb on - strand, within SM_b21225 at 790.043 kb on + strand, within SM_b21225 at 790.044 kb on - strand, within SM_b21225 at 790.259 kb on + strand at 790.260 kb on - strand at 790.339 kb on + strand at 790.339 kb on + strand at 790.340 kb on - strand at 790.340 kb on - strand at 790.507 kb on + strand, within SM_b21226 at 790.507 kb on + strand, within SM_b21226 at 790.508 kb on - strand, within SM_b21226 at 790.578 kb on - strand, within SM_b21226 at 790.578 kb on - strand, within SM_b21226 at 790.588 kb on - strand, within SM_b21226 at 790.857 kb on + strand, within SM_b21226 at 791.033 kb on - strand at 791.033 kb on - strand at 791.068 kb on + strand at 791.068 kb on + strand at 791.069 kb on - strand at 791.143 kb on - strand at 791.180 kb on + strand, within SM_b21227 at 791.198 kb on + strand, within SM_b21227 at 791.199 kb on - strand, within SM_b21227 at 791.229 kb on - strand, within SM_b21227
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 788,490 - SM_b21224 0.50 -2.3 788,490 - SM_b21224 0.50 -0.7 788,490 - SM_b21224 0.50 +2.2 788,490 - SM_b21224 0.50 +0.1 789,010 - SM_b21224 0.77 -0.4 789,010 - SM_b21224 0.77 +1.0 789,220 + SM_b21224 0.89 +1.2 789,273 + -1.2 789,316 + +0.4 789,356 + +0.2 789,356 + +0.9 789,357 - +0.1 789,357 - +0.2 789,358 + -0.3 789,359 - -0.1 789,359 - +0.1 789,359 - -1.3 789,359 - +0.4 789,500 + +0.2 789,500 + -1.9 789,809 + SM_b21225 0.45 -1.4 789,810 - SM_b21225 0.45 -0.3 789,984 - SM_b21225 0.65 +1.1 790,043 + SM_b21225 0.72 +0.4 790,044 - SM_b21225 0.73 +2.7 790,259 + -2.0 790,260 - -0.2 790,339 + -0.2 790,339 + -0.4 790,340 - -1.0 790,340 - -0.5 790,507 + SM_b21226 0.25 -0.6 790,507 + SM_b21226 0.25 -0.9 790,508 - SM_b21226 0.25 +1.7 790,578 - SM_b21226 0.35 -1.9 790,578 - SM_b21226 0.35 -0.8 790,588 - SM_b21226 0.36 +0.2 790,857 + SM_b21226 0.72 +0.6 791,033 - -0.3 791,033 - -1.8 791,068 + -1.2 791,068 + +1.6 791,069 - +0.2 791,143 - -0.6 791,180 + SM_b21227 0.12 +1.7 791,198 + SM_b21227 0.14 -0.5 791,199 - SM_b21227 0.14 +1.2 791,229 - SM_b21227 0.17 +0.5
Or see this region's nucleotide sequence