Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21071 and SM_b21072 are separated by 44 nucleotides SM_b21072 and SM_b21073 are separated by 427 nucleotides SM_b21073 and SM_b21074 are separated by 71 nucleotides
SM_b21071: SM_b21071 - UDP-phosphate galactosephosphotransferase, at 708,086 to 708,736
_b21071
SM_b21072: SM_b21072 - hypothetical protein, at 708,781 to 709,035
_b21072
SM_b21073: SM_b21073 - OMA family outer membrane saccharide export protein, at 709,463 to 710,830
_b21073
SM_b21074: SM_b21074 - glycosyltransferase, at 710,902 to 711,801
_b21074
Position (kb) 709
710
711 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 708.473 kb on - strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.620 kb on + strand, within SM_b21071 at 708.621 kb on - strand, within SM_b21071 at 708.650 kb on + strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.655 kb on - strand, within SM_b21071 at 708.695 kb on - strand at 708.734 kb on + strand at 708.734 kb on + strand at 708.734 kb on + strand at 708.755 kb on + strand at 708.755 kb on + strand at 708.756 kb on - strand at 708.845 kb on + strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.849 kb on + strand, within SM_b21072 at 708.850 kb on - strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.872 kb on + strand, within SM_b21072 at 708.873 kb on - strand, within SM_b21072 at 708.873 kb on - strand, within SM_b21072 at 709.035 kb on + strand at 709.147 kb on + strand at 709.178 kb on + strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.291 kb on + strand at 709.292 kb on - strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.383 kb on - strand at 709.383 kb on - strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.424 kb on + strand at 709.444 kb on + strand at 709.444 kb on + strand at 709.444 kb on + strand at 709.445 kb on - strand at 709.445 kb on - strand at 709.452 kb on + strand at 709.453 kb on - strand at 709.453 kb on - strand at 709.465 kb on - strand at 709.662 kb on + strand, within SM_b21073 at 709.662 kb on + strand, within SM_b21073 at 709.737 kb on - strand, within SM_b21073 at 709.821 kb on + strand, within SM_b21073 at 709.822 kb on - strand, within SM_b21073 at 709.861 kb on + strand, within SM_b21073 at 709.901 kb on + strand, within SM_b21073 at 709.918 kb on - strand, within SM_b21073 at 709.918 kb on - strand, within SM_b21073 at 709.979 kb on + strand, within SM_b21073 at 709.980 kb on - strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.988 kb on + strand, within SM_b21073 at 709.989 kb on - strand, within SM_b21073 at 709.989 kb on - strand, within SM_b21073 at 709.989 kb on - strand, within SM_b21073 at 710.058 kb on - strand, within SM_b21073 at 710.114 kb on + strand, within SM_b21073 at 710.230 kb on + strand, within SM_b21073 at 710.231 kb on - strand, within SM_b21073 at 710.231 kb on - strand, within SM_b21073 at 710.376 kb on - strand, within SM_b21073 at 710.445 kb on + strand, within SM_b21073 at 710.445 kb on + strand, within SM_b21073 at 710.445 kb on + strand, within SM_b21073 at 710.446 kb on - strand, within SM_b21073 at 710.446 kb on - strand, within SM_b21073 at 710.446 kb on - strand, within SM_b21073 at 710.446 kb on - strand, within SM_b21073 at 710.446 kb on - strand, within SM_b21073 at 710.446 kb on - strand, within SM_b21073 at 710.503 kb on + strand, within SM_b21073 at 710.504 kb on - strand, within SM_b21073 at 710.504 kb on - strand, within SM_b21073 at 710.518 kb on + strand, within SM_b21073 at 710.533 kb on - strand, within SM_b21073 at 710.620 kb on + strand, within SM_b21073 at 710.647 kb on + strand, within SM_b21073 at 710.687 kb on + strand, within SM_b21073 at 710.688 kb on - strand, within SM_b21073 at 710.712 kb on + strand at 710.712 kb on + strand at 710.748 kb on - strand at 710.748 kb on - strand at 710.803 kb on + strand at 710.804 kb on - strand at 710.830 kb on + strand at 710.903 kb on + strand at 710.903 kb on + strand at 710.911 kb on + strand at 710.925 kb on - strand at 710.966 kb on - strand at 710.966 kb on - strand at 710.968 kb on - strand at 711.002 kb on + strand, within SM_b21074 at 711.002 kb on + strand, within SM_b21074 at 711.002 kb on + strand, within SM_b21074 at 711.003 kb on - strand, within SM_b21074 at 711.003 kb on - strand, within SM_b21074 at 711.003 kb on - strand, within SM_b21074 at 711.053 kb on - strand, within SM_b21074 at 711.053 kb on - strand, within SM_b21074 at 711.072 kb on + strand, within SM_b21074 at 711.073 kb on - strand, within SM_b21074 at 711.101 kb on + strand, within SM_b21074 at 711.323 kb on + strand, within SM_b21074 at 711.324 kb on - strand, within SM_b21074 at 711.324 kb on - strand, within SM_b21074 at 711.513 kb on + strand, within SM_b21074 at 711.610 kb on + strand, within SM_b21074 at 711.610 kb on + strand, within SM_b21074 at 711.610 kb on + strand, within SM_b21074 at 711.610 kb on + strand, within SM_b21074 at 711.611 kb on - strand, within SM_b21074 at 711.611 kb on - strand, within SM_b21074 at 711.611 kb on - strand, within SM_b21074 at 711.611 kb on - strand, within SM_b21074 at 711.631 kb on + strand, within SM_b21074 at 711.785 kb on - strand at 711.785 kb on - strand at 711.808 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 708,473 - SM_b21071 0.59 -2.0 708,597 + SM_b21071 0.78 -0.7 708,597 + SM_b21071 0.78 +0.4 708,597 + SM_b21071 0.78 -0.6 708,598 - SM_b21071 0.79 +0.3 708,598 - SM_b21071 0.79 -2.1 708,598 - SM_b21071 0.79 +0.2 708,598 - SM_b21071 0.79 -0.5 708,620 + SM_b21071 0.82 +0.7 708,621 - SM_b21071 0.82 +0.4 708,650 + SM_b21071 0.87 +1.5 708,651 - SM_b21071 0.87 -0.7 708,651 - SM_b21071 0.87 +0.6 708,651 - SM_b21071 0.87 +0.2 708,655 - SM_b21071 0.87 +0.6 708,695 - +0.3 708,734 + +0.2 708,734 + -1.4 708,734 + -1.5 708,755 + +1.3 708,755 + +1.8 708,756 - -1.1 708,845 + SM_b21072 0.25 -0.9 708,846 - SM_b21072 0.25 -0.2 708,846 - SM_b21072 0.25 -0.1 708,846 - SM_b21072 0.25 +1.1 708,849 + SM_b21072 0.27 +0.3 708,850 - SM_b21072 0.27 -1.7 708,856 + SM_b21072 0.29 +0.5 708,856 + SM_b21072 0.29 +0.6 708,856 + SM_b21072 0.29 -2.4 708,872 + SM_b21072 0.36 -3.4 708,873 - SM_b21072 0.36 -0.7 708,873 - SM_b21072 0.36 +0.3 709,035 + +0.8 709,147 + +0.3 709,178 + -1.2 709,179 - -0.3 709,179 - -1.6 709,179 - -0.3 709,179 - -0.4 709,179 - -0.0 709,179 - -0.1 709,291 + -1.3 709,292 - +2.0 709,382 + -1.2 709,382 + -0.3 709,382 + +0.7 709,382 + +0.1 709,382 + -0.2 709,382 + +0.1 709,383 - +0.7 709,383 - -1.7 709,390 + -0.4 709,390 + +0.1 709,424 + +0.2 709,444 + -0.4 709,444 + +1.0 709,444 + -0.7 709,445 - -0.6 709,445 - +1.3 709,452 + -0.4 709,453 - -0.2 709,453 - -0.3 709,465 - +0.9 709,662 + SM_b21073 0.15 +0.9 709,662 + SM_b21073 0.15 -2.8 709,737 - SM_b21073 0.20 +0.8 709,821 + SM_b21073 0.26 +1.8 709,822 - SM_b21073 0.26 -0.2 709,861 + SM_b21073 0.29 +0.1 709,901 + SM_b21073 0.32 +0.4 709,918 - SM_b21073 0.33 +1.8 709,918 - SM_b21073 0.33 +0.2 709,979 + SM_b21073 0.38 +0.4 709,980 - SM_b21073 0.38 -0.3 709,988 + SM_b21073 0.38 +0.8 709,988 + SM_b21073 0.38 -0.2 709,988 + SM_b21073 0.38 +1.6 709,988 + SM_b21073 0.38 +0.5 709,988 + SM_b21073 0.38 +0.3 709,989 - SM_b21073 0.38 +0.3 709,989 - SM_b21073 0.38 -1.2 709,989 - SM_b21073 0.38 +0.0 710,058 - SM_b21073 0.43 +0.4 710,114 + SM_b21073 0.48 +0.0 710,230 + SM_b21073 0.56 -1.1 710,231 - SM_b21073 0.56 -0.4 710,231 - SM_b21073 0.56 +0.7 710,376 - SM_b21073 0.67 -1.6 710,445 + SM_b21073 0.72 -0.1 710,445 + SM_b21073 0.72 +0.8 710,445 + SM_b21073 0.72 +0.4 710,446 - SM_b21073 0.72 -0.6 710,446 - SM_b21073 0.72 -0.8 710,446 - SM_b21073 0.72 +0.2 710,446 - SM_b21073 0.72 +0.3 710,446 - SM_b21073 0.72 +0.8 710,446 - SM_b21073 0.72 -0.1 710,503 + SM_b21073 0.76 +1.3 710,504 - SM_b21073 0.76 -0.6 710,504 - SM_b21073 0.76 -1.1 710,518 + SM_b21073 0.77 +0.6 710,533 - SM_b21073 0.78 -0.8 710,620 + SM_b21073 0.85 +1.4 710,647 + SM_b21073 0.87 +0.6 710,687 + SM_b21073 0.89 -0.0 710,688 - SM_b21073 0.90 -0.3 710,712 + +1.4 710,712 + +0.2 710,748 - -0.2 710,748 - +0.5 710,803 + +1.6 710,804 - +0.4 710,830 + +0.3 710,903 + -0.5 710,903 + -0.4 710,911 + -0.1 710,925 - +0.2 710,966 - -0.6 710,966 - -0.6 710,968 - -0.4 711,002 + SM_b21074 0.11 -1.2 711,002 + SM_b21074 0.11 -0.3 711,002 + SM_b21074 0.11 +0.8 711,003 - SM_b21074 0.11 -1.1 711,003 - SM_b21074 0.11 +1.8 711,003 - SM_b21074 0.11 +0.3 711,053 - SM_b21074 0.17 -0.3 711,053 - SM_b21074 0.17 +0.2 711,072 + SM_b21074 0.19 +0.3 711,073 - SM_b21074 0.19 -1.1 711,101 + SM_b21074 0.22 -0.3 711,323 + SM_b21074 0.47 -0.2 711,324 - SM_b21074 0.47 -0.5 711,324 - SM_b21074 0.47 +0.9 711,513 + SM_b21074 0.68 +0.6 711,610 + SM_b21074 0.79 -0.7 711,610 + SM_b21074 0.79 -0.5 711,610 + SM_b21074 0.79 -0.6 711,610 + SM_b21074 0.79 +0.5 711,611 - SM_b21074 0.79 -2.4 711,611 - SM_b21074 0.79 -0.1 711,611 - SM_b21074 0.79 -1.1 711,611 - SM_b21074 0.79 -1.4 711,631 + SM_b21074 0.81 -1.8 711,785 - +0.1 711,785 - -0.5 711,808 + +0.1
Or see this region's nucleotide sequence