Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21043 and SM_b21044 are separated by 175 nucleotides SM_b21044 and SM_b21695 are separated by 721 nucleotides
SM_b21043: SM_b21043 - hypothetical protein, at 663,077 to 663,646
_b21043
SM_b21044: SM_b21044 - ATP-dependent DNA ligase, at 663,822 to 665,732
_b21044
SM_b21695: SM_b21695 - hypothetical protein, at 666,454 to 666,726
_b21695
Position (kb) 663
664
665
666 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 662.935 kb on - strand at 662.936 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.941 kb on - strand at 662.941 kb on - strand at 662.941 kb on - strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.947 kb on - strand at 662.947 kb on - strand at 662.947 kb on - strand at 662.947 kb on - strand at 663.026 kb on + strand at 663.027 kb on - strand at 663.034 kb on - strand at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.232 kb on - strand, within SM_b21043 at 663.232 kb on - strand, within SM_b21043 at 663.387 kb on + strand, within SM_b21043 at 663.391 kb on + strand, within SM_b21043 at 663.450 kb on + strand, within SM_b21043 at 663.450 kb on + strand, within SM_b21043 at 663.644 kb on + strand at 663.676 kb on + strand at 663.755 kb on + strand at 663.755 kb on + strand at 663.755 kb on + strand at 663.767 kb on + strand at 663.823 kb on + strand at 663.823 kb on + strand at 663.824 kb on - strand at 663.824 kb on - strand at 663.873 kb on - strand at 663.959 kb on - strand at 663.998 kb on - strand at 664.048 kb on + strand at 664.049 kb on - strand, within SM_b21044 at 664.305 kb on + strand, within SM_b21044 at 664.306 kb on - strand, within SM_b21044 at 664.306 kb on - strand, within SM_b21044 at 664.468 kb on + strand, within SM_b21044 at 664.468 kb on + strand, within SM_b21044 at 664.495 kb on - strand, within SM_b21044 at 664.608 kb on + strand, within SM_b21044 at 664.609 kb on - strand, within SM_b21044 at 664.738 kb on + strand, within SM_b21044 at 664.753 kb on + strand, within SM_b21044 at 664.871 kb on - strand, within SM_b21044 at 664.871 kb on - strand, within SM_b21044 at 664.895 kb on - strand, within SM_b21044 at 664.927 kb on + strand, within SM_b21044 at 664.928 kb on - strand, within SM_b21044 at 665.105 kb on - strand, within SM_b21044 at 665.144 kb on - strand, within SM_b21044 at 665.144 kb on - strand, within SM_b21044 at 665.224 kb on + strand at 665.224 kb on + strand, within SM_b21044 at 665.437 kb on + strand, within SM_b21044 at 665.438 kb on - strand, within SM_b21044 at 665.438 kb on - strand, within SM_b21044 at 665.439 kb on + strand, within SM_b21044 at 665.439 kb on + strand, within SM_b21044 at 665.439 kb on + strand, within SM_b21044 at 665.440 kb on - strand, within SM_b21044 at 665.440 kb on - strand, within SM_b21044 at 665.440 kb on - strand, within SM_b21044 at 665.459 kb on + strand, within SM_b21044 at 665.460 kb on - strand, within SM_b21044 at 665.725 kb on - strand at 665.754 kb on + strand at 665.780 kb on + strand at 665.780 kb on + strand at 665.781 kb on - strand at 665.828 kb on - strand at 665.903 kb on + strand at 665.903 kb on + strand at 665.904 kb on - strand at 665.904 kb on - strand at 665.904 kb on - strand at 665.990 kb on + strand at 665.990 kb on + strand at 666.169 kb on + strand at 666.177 kb on + strand at 666.304 kb on + strand at 666.305 kb on - strand at 666.305 kb on - strand at 666.305 kb on - strand at 666.305 kb on - strand at 666.313 kb on - strand at 666.412 kb on + strand at 666.425 kb on - strand at 666.455 kb on + strand at 666.455 kb on + strand at 666.492 kb on + strand, within SM_b21695 at 666.564 kb on - strand, within SM_b21695 at 666.564 kb on - strand, within SM_b21695 at 666.602 kb on - strand, within SM_b21695 at 666.650 kb on + strand, within SM_b21695 at 666.650 kb on + strand, within SM_b21695 at 666.718 kb on - strand at 666.723 kb on - strand at 666.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 662,935 - +0.0 662,936 + -0.9 662,940 + +1.7 662,940 + +1.8 662,940 + +0.7 662,940 + +0.3 662,941 - -0.6 662,941 - -0.0 662,941 - +1.8 662,946 + -0.9 662,946 + +2.8 662,946 + +1.4 662,946 + -0.8 662,947 - -0.0 662,947 - -1.3 662,947 - -0.5 662,947 - +0.7 663,026 + -0.7 663,027 - +0.2 663,034 - -0.1 663,229 + SM_b21043 0.27 -0.6 663,229 + SM_b21043 0.27 -0.5 663,229 + SM_b21043 0.27 +0.1 663,229 + SM_b21043 0.27 -1.1 663,230 - SM_b21043 0.27 +0.8 663,230 - SM_b21043 0.27 -0.4 663,230 - SM_b21043 0.27 -1.1 663,230 - SM_b21043 0.27 +1.8 663,230 - SM_b21043 0.27 +0.9 663,230 - SM_b21043 0.27 -1.0 663,232 - SM_b21043 0.27 +1.2 663,232 - SM_b21043 0.27 -0.8 663,387 + SM_b21043 0.54 -0.1 663,391 + SM_b21043 0.55 +0.8 663,450 + SM_b21043 0.65 -0.2 663,450 + SM_b21043 0.65 -2.1 663,644 + -0.4 663,676 + +0.0 663,755 + +1.3 663,755 + -0.3 663,755 + -0.0 663,767 + +0.6 663,823 + +0.5 663,823 + -2.0 663,824 - -0.2 663,824 - -1.1 663,873 - -0.4 663,959 - -0.7 663,998 - +0.3 664,048 + +1.8 664,049 - SM_b21044 0.12 -0.2 664,305 + SM_b21044 0.25 -0.0 664,306 - SM_b21044 0.25 -0.3 664,306 - SM_b21044 0.25 +0.7 664,468 + SM_b21044 0.34 -0.3 664,468 + SM_b21044 0.34 +0.3 664,495 - SM_b21044 0.35 -0.0 664,608 + SM_b21044 0.41 +0.0 664,609 - SM_b21044 0.41 +3.5 664,738 + SM_b21044 0.48 +0.4 664,753 + SM_b21044 0.49 -0.8 664,871 - SM_b21044 0.55 +0.8 664,871 - SM_b21044 0.55 +0.2 664,895 - SM_b21044 0.56 +0.5 664,927 + SM_b21044 0.58 -0.6 664,928 - SM_b21044 0.58 -1.1 665,105 - SM_b21044 0.67 +0.4 665,144 - SM_b21044 0.69 +8.1 665,144 - SM_b21044 0.69 -0.3 665,224 + +2.8 665,224 + SM_b21044 0.73 -0.1 665,437 + SM_b21044 0.85 +0.1 665,438 - SM_b21044 0.85 +0.6 665,438 - SM_b21044 0.85 -0.6 665,439 + SM_b21044 0.85 +1.2 665,439 + SM_b21044 0.85 -2.1 665,439 + SM_b21044 0.85 +0.2 665,440 - SM_b21044 0.85 -0.1 665,440 - SM_b21044 0.85 -1.9 665,440 - SM_b21044 0.85 +1.8 665,459 + SM_b21044 0.86 +0.5 665,460 - SM_b21044 0.86 +0.0 665,725 - -0.7 665,754 + +0.5 665,780 + +1.2 665,780 + -1.0 665,781 - -0.8 665,828 - +1.2 665,903 + -0.7 665,903 + +0.9 665,904 - -0.9 665,904 - -1.5 665,904 - -0.8 665,990 + +1.6 665,990 + +0.3 666,169 + +0.3 666,177 + -0.8 666,304 + +1.0 666,305 - +0.1 666,305 - -0.4 666,305 - -0.1 666,305 - -1.1 666,313 - -1.6 666,412 + -0.6 666,425 - +1.1 666,455 + +1.8 666,455 + +1.1 666,492 + SM_b21695 0.14 -0.6 666,564 - SM_b21695 0.40 -0.4 666,564 - SM_b21695 0.40 +1.4 666,602 - SM_b21695 0.54 +0.4 666,650 + SM_b21695 0.72 -1.0 666,650 + SM_b21695 0.72 +0.8 666,718 - +0.5 666,723 - -1.6 666,723 - +1.4
Or see this region's nucleotide sequence