Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20624 and SM_b20625 are separated by 24 nucleotides SM_b20625 and SM_b20626 are separated by 75 nucleotides
SM_b20624: SM_b20624 - methylthioribose-1-phosphate isomerase, at 1,644,485 to 1,645,579
_b20624
SM_b20625: SM_b20625 - hypothetical protein, at 1,645,604 to 1,646,809
_b20625
SM_b20626: SM_b20626 - AraC family transcriptional regulator, at 1,646,885 to 1,647,871
_b20626
Position (kb)
1645
1646
1647 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1645.004 kb on + strand at 1645.029 kb on - strand, within SM_b20624 at 1645.064 kb on + strand, within SM_b20624 at 1645.064 kb on + strand, within SM_b20624 at 1645.065 kb on - strand, within SM_b20624 at 1645.301 kb on + strand, within SM_b20624 at 1645.302 kb on - strand, within SM_b20624 at 1645.511 kb on - strand at 1645.613 kb on + strand at 1645.614 kb on - strand at 1645.614 kb on - strand at 1645.639 kb on - strand at 1645.639 kb on - strand at 1645.672 kb on - strand at 1645.672 kb on - strand at 1645.672 kb on - strand at 1646.082 kb on + strand, within SM_b20625 at 1646.082 kb on + strand, within SM_b20625 at 1646.083 kb on - strand, within SM_b20625 at 1646.083 kb on - strand, within SM_b20625 at 1646.083 kb on - strand, within SM_b20625 at 1646.083 kb on - strand, within SM_b20625 at 1646.083 kb on - strand, within SM_b20625 at 1646.297 kb on - strand, within SM_b20625 at 1646.298 kb on + strand, within SM_b20625 at 1646.307 kb on - strand, within SM_b20625 at 1646.801 kb on - strand at 1646.810 kb on - strand at 1646.810 kb on - strand at 1646.839 kb on + strand at 1646.843 kb on + strand at 1646.843 kb on + strand at 1646.844 kb on - strand at 1646.873 kb on - strand at 1646.975 kb on + strand at 1646.975 kb on + strand at 1646.976 kb on - strand at 1647.096 kb on + strand, within SM_b20626 at 1647.097 kb on - strand, within SM_b20626 at 1647.201 kb on + strand, within SM_b20626 at 1647.201 kb on + strand, within SM_b20626 at 1647.202 kb on - strand, within SM_b20626 at 1647.202 kb on - strand, within SM_b20626 at 1647.202 kb on - strand, within SM_b20626 at 1647.202 kb on - strand, within SM_b20626 at 1647.215 kb on + strand, within SM_b20626 at 1647.321 kb on + strand, within SM_b20626 at 1647.368 kb on - strand, within SM_b20626 at 1647.368 kb on - strand, within SM_b20626 at 1647.368 kb on - strand, within SM_b20626
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 1,645,004 + +1.8 1,645,029 - SM_b20624 0.50 -0.2 1,645,064 + SM_b20624 0.53 +1.2 1,645,064 + SM_b20624 0.53 -0.2 1,645,065 - SM_b20624 0.53 +0.2 1,645,301 + SM_b20624 0.75 -0.1 1,645,302 - SM_b20624 0.75 +0.5 1,645,511 - -0.3 1,645,613 + -0.7 1,645,614 - +0.8 1,645,614 - -1.4 1,645,639 - +1.5 1,645,639 - +0.2 1,645,672 - -0.6 1,645,672 - +3.0 1,645,672 - -1.0 1,646,082 + SM_b20625 0.40 +5.6 1,646,082 + SM_b20625 0.40 -0.6 1,646,083 - SM_b20625 0.40 +1.5 1,646,083 - SM_b20625 0.40 -0.1 1,646,083 - SM_b20625 0.40 -0.9 1,646,083 - SM_b20625 0.40 +2.5 1,646,083 - SM_b20625 0.40 -1.0 1,646,297 - SM_b20625 0.57 -0.4 1,646,298 + SM_b20625 0.58 +0.1 1,646,307 - SM_b20625 0.58 -1.3 1,646,801 - -1.1 1,646,810 - +0.5 1,646,810 - -0.3 1,646,839 + -0.6 1,646,843 + +0.0 1,646,843 + -0.2 1,646,844 - -0.5 1,646,873 - -0.5 1,646,975 + +0.7 1,646,975 + -0.2 1,646,976 - -0.5 1,647,096 + SM_b20626 0.21 +0.3 1,647,097 - SM_b20626 0.21 +0.0 1,647,201 + SM_b20626 0.32 +0.8 1,647,201 + SM_b20626 0.32 -0.5 1,647,202 - SM_b20626 0.32 -1.6 1,647,202 - SM_b20626 0.32 -0.6 1,647,202 - SM_b20626 0.32 +0.1 1,647,202 - SM_b20626 0.32 +0.3 1,647,215 + SM_b20626 0.33 -0.7 1,647,321 + SM_b20626 0.44 -0.1 1,647,368 - SM_b20626 0.49 +0.4 1,647,368 - SM_b20626 0.49 +2.4 1,647,368 - SM_b20626 0.49 -1.8
Or see this region's nucleotide sequence