Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20625

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20624 and SM_b20625 are separated by 24 nucleotidesSM_b20625 and SM_b20626 are separated by 75 nucleotides SM_b20624: SM_b20624 - methylthioribose-1-phosphate isomerase, at 1,644,485 to 1,645,579 _b20624 SM_b20625: SM_b20625 - hypothetical protein, at 1,645,604 to 1,646,809 _b20625 SM_b20626: SM_b20626 - AraC family transcriptional regulator, at 1,646,885 to 1,647,871 _b20626 Position (kb) 1645 1646 1647Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1645.004 kb on + strandat 1645.029 kb on - strand, within SM_b20624at 1645.064 kb on + strand, within SM_b20624at 1645.064 kb on + strand, within SM_b20624at 1645.065 kb on - strand, within SM_b20624at 1645.301 kb on + strand, within SM_b20624at 1645.302 kb on - strand, within SM_b20624at 1645.511 kb on - strandat 1645.613 kb on + strandat 1645.614 kb on - strandat 1645.614 kb on - strandat 1645.639 kb on - strandat 1645.639 kb on - strandat 1645.672 kb on - strandat 1645.672 kb on - strandat 1645.672 kb on - strandat 1646.082 kb on + strand, within SM_b20625at 1646.082 kb on + strand, within SM_b20625at 1646.083 kb on - strand, within SM_b20625at 1646.083 kb on - strand, within SM_b20625at 1646.083 kb on - strand, within SM_b20625at 1646.083 kb on - strand, within SM_b20625at 1646.083 kb on - strand, within SM_b20625at 1646.297 kb on - strand, within SM_b20625at 1646.298 kb on + strand, within SM_b20625at 1646.307 kb on - strand, within SM_b20625at 1646.801 kb on - strandat 1646.810 kb on - strandat 1646.810 kb on - strandat 1646.839 kb on + strandat 1646.843 kb on + strandat 1646.843 kb on + strandat 1646.844 kb on - strandat 1646.873 kb on - strandat 1646.975 kb on + strandat 1646.975 kb on + strandat 1646.976 kb on - strandat 1647.096 kb on + strand, within SM_b20626at 1647.097 kb on - strand, within SM_b20626at 1647.201 kb on + strand, within SM_b20626at 1647.201 kb on + strand, within SM_b20626at 1647.202 kb on - strand, within SM_b20626at 1647.202 kb on - strand, within SM_b20626at 1647.202 kb on - strand, within SM_b20626at 1647.202 kb on - strand, within SM_b20626at 1647.215 kb on + strand, within SM_b20626at 1647.321 kb on + strand, within SM_b20626at 1647.368 kb on - strand, within SM_b20626at 1647.368 kb on - strand, within SM_b20626at 1647.368 kb on - strand, within SM_b20626

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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1,645,004 + +1.8
1,645,029 - SM_b20624 0.50 -0.2
1,645,064 + SM_b20624 0.53 +1.2
1,645,064 + SM_b20624 0.53 -0.2
1,645,065 - SM_b20624 0.53 +0.2
1,645,301 + SM_b20624 0.75 -0.1
1,645,302 - SM_b20624 0.75 +0.5
1,645,511 - -0.3
1,645,613 + -0.7
1,645,614 - +0.8
1,645,614 - -1.4
1,645,639 - +1.5
1,645,639 - +0.2
1,645,672 - -0.6
1,645,672 - +3.0
1,645,672 - -1.0
1,646,082 + SM_b20625 0.40 +5.6
1,646,082 + SM_b20625 0.40 -0.6
1,646,083 - SM_b20625 0.40 +1.5
1,646,083 - SM_b20625 0.40 -0.1
1,646,083 - SM_b20625 0.40 -0.9
1,646,083 - SM_b20625 0.40 +2.5
1,646,083 - SM_b20625 0.40 -1.0
1,646,297 - SM_b20625 0.57 -0.4
1,646,298 + SM_b20625 0.58 +0.1
1,646,307 - SM_b20625 0.58 -1.3
1,646,801 - -1.1
1,646,810 - +0.5
1,646,810 - -0.3
1,646,839 + -0.6
1,646,843 + +0.0
1,646,843 + -0.2
1,646,844 - -0.5
1,646,873 - -0.5
1,646,975 + +0.7
1,646,975 + -0.2
1,646,976 - -0.5
1,647,096 + SM_b20626 0.21 +0.3
1,647,097 - SM_b20626 0.21 +0.0
1,647,201 + SM_b20626 0.32 +0.8
1,647,201 + SM_b20626 0.32 -0.5
1,647,202 - SM_b20626 0.32 -1.6
1,647,202 - SM_b20626 0.32 -0.6
1,647,202 - SM_b20626 0.32 +0.1
1,647,202 - SM_b20626 0.32 +0.3
1,647,215 + SM_b20626 0.33 -0.7
1,647,321 + SM_b20626 0.44 -0.1
1,647,368 - SM_b20626 0.49 +0.4
1,647,368 - SM_b20626 0.49 +2.4
1,647,368 - SM_b20626 0.49 -1.8

Or see this region's nucleotide sequence