Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20605 and SM_b20606 are separated by 212 nucleotides SM_b20606 and SM_b20607 overlap by 4 nucleotides SM_b20607 and SM_b20608 are separated by 32 nucleotides SM_b20608 and SM_b20609 are separated by 306 nucleotides
SM_b20605: SM_b20605 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,619,075 to 1,620,367
_b20605
SM_b20606: SM_b20606 - hypothetical protein, at 1,620,580 to 1,621,029
_b20606
SM_b20607: SM_b20607 - hypothetical protein, at 1,621,026 to 1,621,490
_b20607
SM_b20608: SM_b20608 - ArsR family transcriptional regulator, at 1,621,523 to 1,621,861
_b20608
SM_b20609: SM_b20609 - two-component sensor histidine kinase, at 1,622,168 to 1,625,548
_b20609
Position (kb)
1621
1622 Strain fitness (log2 ratio)
-2
-1
0
1 at 1620.153 kb on - strand, within SM_b20605 at 1620.316 kb on + strand at 1620.362 kb on - strand at 1620.465 kb on + strand at 1620.466 kb on - strand at 1620.466 kb on - strand at 1620.476 kb on - strand at 1620.480 kb on - strand at 1620.588 kb on - strand at 1620.639 kb on - strand, within SM_b20606 at 1621.016 kb on + strand at 1621.016 kb on + strand at 1621.057 kb on + strand at 1621.058 kb on - strand at 1621.059 kb on - strand at 1621.262 kb on - strand, within SM_b20607 at 1621.262 kb on - strand, within SM_b20607 at 1621.279 kb on + strand, within SM_b20607 at 1621.280 kb on - strand, within SM_b20607 at 1621.280 kb on - strand, within SM_b20607 at 1621.454 kb on + strand at 1621.454 kb on + strand at 1621.455 kb on - strand at 1621.455 kb on - strand at 1621.566 kb on + strand, within SM_b20608 at 1621.566 kb on + strand, within SM_b20608 at 1621.566 kb on + strand, within SM_b20608 at 1621.566 kb on + strand, within SM_b20608 at 1621.567 kb on - strand, within SM_b20608 at 1621.567 kb on - strand, within SM_b20608 at 1621.608 kb on + strand, within SM_b20608 at 1621.713 kb on - strand, within SM_b20608 at 1622.115 kb on + strand at 1622.115 kb on + strand at 1622.207 kb on + strand at 1622.208 kb on - strand at 1622.208 kb on - strand at 1622.209 kb on + strand at 1622.210 kb on - strand at 1622.243 kb on + strand at 1622.244 kb on - strand at 1622.356 kb on + strand at 1622.356 kb on + strand at 1622.356 kb on + strand at 1622.357 kb on - strand at 1622.367 kb on - strand at 1622.444 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 1,620,153 - SM_b20605 0.83 +0.1 1,620,316 + +0.3 1,620,362 - +0.5 1,620,465 + -0.2 1,620,466 - -0.0 1,620,466 - +0.1 1,620,476 - -0.5 1,620,480 - -1.0 1,620,588 - -0.6 1,620,639 - SM_b20606 0.13 +0.0 1,621,016 + +0.0 1,621,016 + +0.2 1,621,057 + +0.6 1,621,058 - -0.1 1,621,059 - +0.7 1,621,262 - SM_b20607 0.51 +0.7 1,621,262 - SM_b20607 0.51 -0.1 1,621,279 + SM_b20607 0.54 -0.6 1,621,280 - SM_b20607 0.55 -0.1 1,621,280 - SM_b20607 0.55 +0.3 1,621,454 + -0.4 1,621,454 + +1.3 1,621,455 - -0.4 1,621,455 - -0.9 1,621,566 + SM_b20608 0.13 -0.6 1,621,566 + SM_b20608 0.13 -0.7 1,621,566 + SM_b20608 0.13 -0.8 1,621,566 + SM_b20608 0.13 +0.5 1,621,567 - SM_b20608 0.13 +0.5 1,621,567 - SM_b20608 0.13 -0.5 1,621,608 + SM_b20608 0.25 -0.7 1,621,713 - SM_b20608 0.56 -0.3 1,622,115 + -1.1 1,622,115 + -0.6 1,622,207 + +0.1 1,622,208 - -1.8 1,622,208 - -0.8 1,622,209 + +0.1 1,622,210 - +1.5 1,622,243 + +1.2 1,622,244 - -0.0 1,622,356 + -0.6 1,622,356 + -0.3 1,622,356 + +0.1 1,622,357 - -0.2 1,622,367 - -1.2 1,622,444 + -1.1
Or see this region's nucleotide sequence