Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20606

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20605 and SM_b20606 are separated by 212 nucleotidesSM_b20606 and SM_b20607 overlap by 4 nucleotidesSM_b20607 and SM_b20608 are separated by 32 nucleotides SM_b20605: SM_b20605 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,619,075 to 1,620,367 _b20605 SM_b20606: SM_b20606 - hypothetical protein, at 1,620,580 to 1,621,029 _b20606 SM_b20607: SM_b20607 - hypothetical protein, at 1,621,026 to 1,621,490 _b20607 SM_b20608: SM_b20608 - ArsR family transcriptional regulator, at 1,621,523 to 1,621,861 _b20608 Position (kb) 1620 1621 1622Strain fitness (log2 ratio) -2 -1 0 1at 1619.799 kb on + strand, within SM_b20605at 1619.808 kb on + strand, within SM_b20605at 1619.809 kb on - strand, within SM_b20605at 1619.809 kb on - strand, within SM_b20605at 1619.842 kb on - strand, within SM_b20605at 1619.847 kb on + strand, within SM_b20605at 1619.848 kb on - strand, within SM_b20605at 1619.943 kb on + strand, within SM_b20605at 1619.943 kb on + strand, within SM_b20605at 1619.944 kb on - strand, within SM_b20605at 1619.976 kb on + strand, within SM_b20605at 1619.988 kb on + strand, within SM_b20605at 1619.989 kb on - strand, within SM_b20605at 1620.153 kb on - strand, within SM_b20605at 1620.316 kb on + strandat 1620.362 kb on - strandat 1620.465 kb on + strandat 1620.466 kb on - strandat 1620.466 kb on - strandat 1620.476 kb on - strandat 1620.480 kb on - strandat 1620.588 kb on - strandat 1620.639 kb on - strand, within SM_b20606at 1621.016 kb on + strandat 1621.016 kb on + strandat 1621.057 kb on + strandat 1621.058 kb on - strandat 1621.059 kb on - strandat 1621.262 kb on - strand, within SM_b20607at 1621.262 kb on - strand, within SM_b20607at 1621.279 kb on + strand, within SM_b20607at 1621.280 kb on - strand, within SM_b20607at 1621.280 kb on - strand, within SM_b20607at 1621.454 kb on + strandat 1621.454 kb on + strandat 1621.455 kb on - strandat 1621.455 kb on - strandat 1621.566 kb on + strand, within SM_b20608at 1621.566 kb on + strand, within SM_b20608at 1621.566 kb on + strand, within SM_b20608at 1621.566 kb on + strand, within SM_b20608at 1621.567 kb on - strand, within SM_b20608at 1621.567 kb on - strand, within SM_b20608at 1621.608 kb on + strand, within SM_b20608at 1621.713 kb on - strand, within SM_b20608

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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1,619,799 + SM_b20605 0.56 +0.8
1,619,808 + SM_b20605 0.57 +0.4
1,619,809 - SM_b20605 0.57 -2.1
1,619,809 - SM_b20605 0.57 -0.1
1,619,842 - SM_b20605 0.59 +0.0
1,619,847 + SM_b20605 0.60 -0.1
1,619,848 - SM_b20605 0.60 +0.5
1,619,943 + SM_b20605 0.67 -0.6
1,619,943 + SM_b20605 0.67 -0.3
1,619,944 - SM_b20605 0.67 +0.2
1,619,976 + SM_b20605 0.70 -0.6
1,619,988 + SM_b20605 0.71 +1.1
1,619,989 - SM_b20605 0.71 -0.7
1,620,153 - SM_b20605 0.83 +0.1
1,620,316 + +0.3
1,620,362 - +0.5
1,620,465 + -0.2
1,620,466 - -0.0
1,620,466 - +0.1
1,620,476 - -0.5
1,620,480 - -1.0
1,620,588 - -0.6
1,620,639 - SM_b20606 0.13 +0.0
1,621,016 + +0.0
1,621,016 + +0.2
1,621,057 + +0.6
1,621,058 - -0.1
1,621,059 - +0.7
1,621,262 - SM_b20607 0.51 +0.7
1,621,262 - SM_b20607 0.51 -0.1
1,621,279 + SM_b20607 0.54 -0.6
1,621,280 - SM_b20607 0.55 -0.1
1,621,280 - SM_b20607 0.55 +0.3
1,621,454 + -0.4
1,621,454 + +1.3
1,621,455 - -0.4
1,621,455 - -0.9
1,621,566 + SM_b20608 0.13 -0.6
1,621,566 + SM_b20608 0.13 -0.7
1,621,566 + SM_b20608 0.13 -0.8
1,621,566 + SM_b20608 0.13 +0.5
1,621,567 - SM_b20608 0.13 +0.5
1,621,567 - SM_b20608 0.13 -0.5
1,621,608 + SM_b20608 0.25 -0.7
1,621,713 - SM_b20608 0.56 -0.3

Or see this region's nucleotide sequence