Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20537 and SM_b20538 are separated by 147 nucleotides
SM_b20537: SM_b20537 - transcriptional regulator, at 561,216 to 562,244
_b20537
SM_b20538: SM_b20538 - solute-binding protein, at 562,392 to 563,678
_b20538
Position (kb) 562
563
564 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 561.436 kb on - strand, within SM_b20537 at 561.570 kb on - strand, within SM_b20537 at 561.771 kb on + strand, within SM_b20537 at 561.772 kb on - strand, within SM_b20537 at 561.772 kb on - strand, within SM_b20537 at 561.894 kb on - strand, within SM_b20537 at 562.003 kb on + strand, within SM_b20537 at 562.123 kb on - strand, within SM_b20537 at 562.123 kb on - strand, within SM_b20537 at 562.176 kb on - strand at 562.180 kb on - strand at 562.389 kb on - strand at 562.396 kb on + strand at 562.582 kb on + strand, within SM_b20538 at 562.693 kb on - strand, within SM_b20538 at 562.693 kb on - strand, within SM_b20538 at 562.842 kb on + strand, within SM_b20538 at 562.908 kb on + strand, within SM_b20538 at 562.908 kb on + strand, within SM_b20538 at 562.909 kb on - strand, within SM_b20538 at 562.972 kb on - strand, within SM_b20538 at 562.983 kb on + strand, within SM_b20538 at 562.983 kb on + strand, within SM_b20538 at 562.983 kb on + strand, within SM_b20538 at 562.984 kb on - strand, within SM_b20538 at 562.984 kb on - strand, within SM_b20538 at 562.989 kb on + strand, within SM_b20538 at 562.990 kb on - strand, within SM_b20538 at 563.031 kb on + strand, within SM_b20538 at 563.032 kb on - strand, within SM_b20538 at 563.079 kb on + strand, within SM_b20538 at 563.086 kb on - strand, within SM_b20538 at 563.182 kb on - strand, within SM_b20538 at 563.203 kb on - strand, within SM_b20538 at 563.203 kb on - strand, within SM_b20538 at 563.203 kb on - strand, within SM_b20538 at 563.263 kb on + strand, within SM_b20538 at 563.263 kb on + strand, within SM_b20538 at 563.263 kb on + strand, within SM_b20538 at 563.298 kb on + strand, within SM_b20538 at 563.299 kb on - strand, within SM_b20538 at 563.299 kb on - strand, within SM_b20538 at 563.299 kb on - strand, within SM_b20538 at 563.299 kb on - strand, within SM_b20538 at 563.299 kb on - strand, within SM_b20538 at 563.302 kb on - strand, within SM_b20538 at 563.496 kb on + strand, within SM_b20538 at 563.496 kb on + strand, within SM_b20538 at 563.496 kb on + strand, within SM_b20538 at 563.497 kb on - strand, within SM_b20538 at 563.743 kb on - strand at 563.796 kb on + strand at 563.796 kb on + strand at 563.796 kb on + strand at 563.836 kb on + strand at 563.836 kb on + strand at 563.836 kb on + strand at 563.836 kb on + strand at 563.837 kb on - strand at 563.842 kb on - strand at 563.903 kb on + strand at 563.962 kb on + strand at 563.962 kb on + strand at 563.963 kb on - strand at 563.963 kb on - strand at 563.994 kb on + strand at 563.994 kb on + strand at 563.994 kb on + strand at 563.995 kb on - strand at 563.995 kb on - strand at 564.132 kb on - strand at 564.160 kb on - strand at 564.191 kb on - strand at 564.221 kb on + strand at 564.222 kb on - strand at 564.298 kb on + strand at 564.418 kb on + strand at 564.418 kb on + strand at 564.418 kb on + strand at 564.418 kb on + strand at 564.418 kb on + strand at 564.418 kb on + strand at 564.418 kb on + strand at 564.418 kb on + strand at 564.419 kb on - strand at 564.419 kb on - strand at 564.419 kb on - strand at 564.431 kb on - strand at 564.536 kb on - strand at 564.541 kb on + strand at 564.555 kb on - strand at 564.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 561,436 - SM_b20537 0.21 +1.1 561,570 - SM_b20537 0.34 +0.3 561,771 + SM_b20537 0.54 +0.1 561,772 - SM_b20537 0.54 +1.1 561,772 - SM_b20537 0.54 +0.3 561,894 - SM_b20537 0.66 +0.8 562,003 + SM_b20537 0.76 -0.7 562,123 - SM_b20537 0.88 +0.6 562,123 - SM_b20537 0.88 -0.3 562,176 - +0.6 562,180 - +0.2 562,389 - +0.3 562,396 + +2.2 562,582 + SM_b20538 0.15 +0.6 562,693 - SM_b20538 0.23 +0.7 562,693 - SM_b20538 0.23 +0.2 562,842 + SM_b20538 0.35 +0.4 562,908 + SM_b20538 0.40 -0.4 562,908 + SM_b20538 0.40 +0.1 562,909 - SM_b20538 0.40 -1.4 562,972 - SM_b20538 0.45 -0.5 562,983 + SM_b20538 0.46 -0.1 562,983 + SM_b20538 0.46 +1.0 562,983 + SM_b20538 0.46 +0.5 562,984 - SM_b20538 0.46 -1.7 562,984 - SM_b20538 0.46 +0.9 562,989 + SM_b20538 0.46 +0.9 562,990 - SM_b20538 0.46 +1.1 563,031 + SM_b20538 0.50 +3.1 563,032 - SM_b20538 0.50 -0.0 563,079 + SM_b20538 0.53 +0.6 563,086 - SM_b20538 0.54 +0.3 563,182 - SM_b20538 0.61 +2.4 563,203 - SM_b20538 0.63 +1.2 563,203 - SM_b20538 0.63 +0.1 563,203 - SM_b20538 0.63 -0.1 563,263 + SM_b20538 0.68 -1.0 563,263 + SM_b20538 0.68 -0.4 563,263 + SM_b20538 0.68 -0.8 563,298 + SM_b20538 0.70 +0.8 563,299 - SM_b20538 0.70 +0.2 563,299 - SM_b20538 0.70 -1.4 563,299 - SM_b20538 0.70 -0.5 563,299 - SM_b20538 0.70 +0.5 563,299 - SM_b20538 0.70 -0.6 563,302 - SM_b20538 0.71 +2.8 563,496 + SM_b20538 0.86 +2.2 563,496 + SM_b20538 0.86 +1.4 563,496 + SM_b20538 0.86 +0.8 563,497 - SM_b20538 0.86 +0.8 563,743 - -0.9 563,796 + +0.2 563,796 + -1.8 563,796 + -0.0 563,836 + -0.6 563,836 + -0.2 563,836 + -0.2 563,836 + -0.5 563,837 - +0.4 563,842 - +0.4 563,903 + -0.1 563,962 + -0.6 563,962 + -2.2 563,963 - -0.7 563,963 - -1.8 563,994 + +0.5 563,994 + -0.2 563,994 + -0.5 563,995 - -0.5 563,995 - -0.2 564,132 - -0.9 564,160 - -0.5 564,191 - -0.8 564,221 + -0.5 564,222 - +0.3 564,298 + -0.1 564,418 + -0.9 564,418 + -0.1 564,418 + +0.8 564,418 + +1.0 564,418 + +0.5 564,418 + -0.1 564,418 + +1.8 564,418 + +1.3 564,419 - -0.7 564,419 - -0.7 564,419 - -1.2 564,431 - -0.4 564,536 - -1.6 564,541 + -0.9 564,555 - -1.3 564,555 - +0.9
Or see this region's nucleotide sequence