Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20492 and SM_b20493 are separated by 114 nucleotides SM_b20493 and SM_b20494 are separated by 122 nucleotides SM_b20494 and SM_b20495 are separated by 880 nucleotides
SM_b20492: SM_b20492 - short-chain oxidoreductase, at 509,567 to 510,469
_b20492
SM_b20493: SM_b20493 - short-chain dehydrogenase, at 510,584 to 511,318
_b20493
SM_b20494: SM_b20494 - transcriptional regulator, at 511,441 to 512,337
_b20494
SM_b20495: SM_b20495 - hypothetical protein, at 513,218 to 514,921
_b20495
Position (kb) 511
512
513 Strain fitness (log2 ratio) -2
-1
0
1
2 at 510.668 kb on + strand, within SM_b20493 at 510.668 kb on + strand, within SM_b20493 at 510.669 kb on - strand, within SM_b20493 at 510.669 kb on - strand, within SM_b20493 at 510.761 kb on - strand, within SM_b20493 at 510.835 kb on + strand, within SM_b20493 at 510.864 kb on + strand, within SM_b20493 at 510.864 kb on + strand, within SM_b20493 at 510.865 kb on - strand, within SM_b20493 at 510.873 kb on + strand, within SM_b20493 at 510.874 kb on - strand, within SM_b20493 at 510.874 kb on - strand, within SM_b20493 at 510.910 kb on + strand, within SM_b20493 at 510.911 kb on - strand, within SM_b20493 at 510.911 kb on - strand, within SM_b20493 at 510.911 kb on - strand, within SM_b20493 at 510.911 kb on - strand, within SM_b20493 at 510.911 kb on - strand, within SM_b20493 at 510.911 kb on - strand, within SM_b20493 at 510.911 kb on - strand, within SM_b20493 at 510.983 kb on + strand, within SM_b20493 at 511.216 kb on - strand, within SM_b20493 at 511.302 kb on - strand at 511.319 kb on - strand at 511.319 kb on - strand at 511.434 kb on - strand at 511.458 kb on + strand at 511.459 kb on - strand at 511.539 kb on + strand, within SM_b20494 at 511.540 kb on - strand, within SM_b20494 at 511.633 kb on + strand, within SM_b20494 at 511.633 kb on + strand, within SM_b20494 at 511.633 kb on + strand, within SM_b20494 at 511.633 kb on + strand, within SM_b20494 at 511.633 kb on + strand, within SM_b20494 at 511.634 kb on - strand, within SM_b20494 at 511.634 kb on - strand, within SM_b20494 at 511.636 kb on + strand, within SM_b20494 at 511.699 kb on - strand, within SM_b20494 at 511.699 kb on - strand, within SM_b20494 at 511.720 kb on - strand, within SM_b20494 at 511.807 kb on - strand, within SM_b20494 at 511.807 kb on - strand, within SM_b20494 at 511.849 kb on + strand, within SM_b20494 at 511.985 kb on + strand, within SM_b20494 at 511.986 kb on - strand, within SM_b20494 at 511.986 kb on - strand, within SM_b20494 at 512.205 kb on - strand at 512.213 kb on + strand, within SM_b20494 at 512.214 kb on - strand, within SM_b20494 at 512.254 kb on + strand at 512.254 kb on + strand at 512.254 kb on + strand at 512.255 kb on - strand at 512.526 kb on + strand at 512.526 kb on + strand at 512.529 kb on + strand at 512.530 kb on - strand at 512.530 kb on - strand at 512.553 kb on + strand at 512.561 kb on + strand at 512.562 kb on - strand at 512.614 kb on - strand at 512.614 kb on - strand at 512.707 kb on + strand at 512.707 kb on + strand at 512.707 kb on + strand at 512.732 kb on + strand at 512.748 kb on + strand at 513.061 kb on + strand at 513.061 kb on + strand at 513.062 kb on - strand at 513.103 kb on + strand at 513.246 kb on + strand at 513.293 kb on + strand at 513.294 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 510,668 + SM_b20493 0.11 -0.5 510,668 + SM_b20493 0.11 -0.4 510,669 - SM_b20493 0.12 -0.4 510,669 - SM_b20493 0.12 +0.2 510,761 - SM_b20493 0.24 -0.5 510,835 + SM_b20493 0.34 -1.5 510,864 + SM_b20493 0.38 -0.4 510,864 + SM_b20493 0.38 +0.4 510,865 - SM_b20493 0.38 -0.6 510,873 + SM_b20493 0.39 -0.4 510,874 - SM_b20493 0.39 +0.3 510,874 - SM_b20493 0.39 -0.1 510,910 + SM_b20493 0.44 +0.3 510,911 - SM_b20493 0.44 +0.5 510,911 - SM_b20493 0.44 -1.3 510,911 - SM_b20493 0.44 +2.3 510,911 - SM_b20493 0.44 -0.0 510,911 - SM_b20493 0.44 +0.6 510,911 - SM_b20493 0.44 +0.6 510,911 - SM_b20493 0.44 +0.5 510,983 + SM_b20493 0.54 +0.5 511,216 - SM_b20493 0.86 +1.7 511,302 - -0.1 511,319 - -0.0 511,319 - +0.7 511,434 - -0.2 511,458 + -0.8 511,459 - +0.2 511,539 + SM_b20494 0.11 +1.6 511,540 - SM_b20494 0.11 +1.5 511,633 + SM_b20494 0.21 -0.2 511,633 + SM_b20494 0.21 -0.1 511,633 + SM_b20494 0.21 +2.1 511,633 + SM_b20494 0.21 -0.1 511,633 + SM_b20494 0.21 -1.8 511,634 - SM_b20494 0.22 -0.5 511,634 - SM_b20494 0.22 +0.5 511,636 + SM_b20494 0.22 -0.0 511,699 - SM_b20494 0.29 +2.0 511,699 - SM_b20494 0.29 +0.5 511,720 - SM_b20494 0.31 -1.0 511,807 - SM_b20494 0.41 +0.3 511,807 - SM_b20494 0.41 -0.5 511,849 + SM_b20494 0.45 -0.1 511,985 + SM_b20494 0.61 -0.7 511,986 - SM_b20494 0.61 +0.4 511,986 - SM_b20494 0.61 -2.0 512,205 - +0.5 512,213 + SM_b20494 0.86 -0.5 512,214 - SM_b20494 0.86 +1.3 512,254 + +0.1 512,254 + -0.1 512,254 + +0.2 512,255 - +0.8 512,526 + +0.2 512,526 + -1.2 512,529 + +0.2 512,530 - -1.0 512,530 - -0.7 512,553 + +1.3 512,561 + -0.5 512,562 - -0.0 512,614 - -1.2 512,614 - -0.5 512,707 + -0.8 512,707 + -1.1 512,707 + -0.8 512,732 + -0.4 512,748 + -1.1 513,061 + -0.4 513,061 + +0.1 513,062 - +0.7 513,103 + -0.8 513,246 + +0.7 513,293 + +1.2 513,294 - -1.2
Or see this region's nucleotide sequence