Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20476

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20474 and SM_b20475 overlap by 14 nucleotidesSM_b20475 and SM_b20476 are separated by 339 nucleotidesSM_b20476 and SM_b20477 are separated by 77 nucleotides SM_b20474: SM_b20474 - hypothetical protein, at 487,781 to 488,002 _b20474 SM_b20475: SM_b20475 - hypothetical protein, at 487,989 to 488,483 _b20475 SM_b20476: SM_b20476 - peptide ABC transporter substrate-binding protein, at 488,823 to 490,388 _b20476 SM_b20477: SM_b20477 - peptide ABC transporter permease, at 490,466 to 491,413 _b20477 Position (kb) 488 489 490 491Strain fitness (log2 ratio) -2 -1 0 1 2at 487.870 kb on + strand, within SM_b20474at 487.944 kb on + strand, within SM_b20474at 488.040 kb on + strand, within SM_b20475at 488.040 kb on + strand, within SM_b20475at 488.041 kb on - strand, within SM_b20475at 488.119 kb on - strand, within SM_b20475at 488.156 kb on + strand, within SM_b20475at 488.216 kb on - strand, within SM_b20475at 488.423 kb on - strand, within SM_b20475at 488.423 kb on - strand, within SM_b20475at 488.455 kb on + strandat 488.460 kb on + strandat 488.461 kb on - strandat 488.477 kb on + strandat 488.477 kb on + strandat 488.478 kb on - strandat 488.535 kb on + strandat 488.535 kb on + strandat 488.535 kb on + strandat 489.006 kb on + strand, within SM_b20476at 489.006 kb on + strand, within SM_b20476at 489.006 kb on + strand, within SM_b20476at 489.006 kb on + strand, within SM_b20476at 489.007 kb on - strand, within SM_b20476at 489.007 kb on - strand, within SM_b20476at 489.007 kb on - strand, within SM_b20476at 489.096 kb on + strand, within SM_b20476at 489.097 kb on - strand, within SM_b20476at 489.098 kb on + strand, within SM_b20476at 489.110 kb on - strand, within SM_b20476at 489.276 kb on - strand, within SM_b20476at 489.276 kb on - strand, within SM_b20476at 489.276 kb on - strand, within SM_b20476at 489.720 kb on + strand, within SM_b20476at 489.832 kb on - strand, within SM_b20476at 489.903 kb on + strand, within SM_b20476at 489.903 kb on + strand, within SM_b20476at 489.904 kb on - strand, within SM_b20476at 489.904 kb on - strand, within SM_b20476at 489.904 kb on - strand, within SM_b20476at 489.904 kb on - strand, within SM_b20476at 490.006 kb on - strand, within SM_b20476at 490.164 kb on + strand, within SM_b20476at 490.164 kb on + strand, within SM_b20476at 490.387 kb on - strandat 490.462 kb on - strandat 490.475 kb on + strandat 490.476 kb on - strandat 490.476 kb on - strandat 490.589 kb on + strand, within SM_b20477at 490.590 kb on - strand, within SM_b20477at 490.922 kb on + strand, within SM_b20477at 490.922 kb on + strand, within SM_b20477at 490.923 kb on - strand, within SM_b20477at 490.923 kb on - strand, within SM_b20477at 490.923 kb on - strand, within SM_b20477at 490.967 kb on + strand, within SM_b20477at 490.967 kb on + strand, within SM_b20477at 490.967 kb on + strand, within SM_b20477at 490.968 kb on - strand, within SM_b20477at 490.968 kb on - strand, within SM_b20477at 491.058 kb on + strand, within SM_b20477at 491.059 kb on - strand, within SM_b20477at 491.059 kb on - strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.106 kb on - strand, within SM_b20477at 491.106 kb on - strand, within SM_b20477at 491.154 kb on - strand, within SM_b20477at 491.317 kb on - strand, within SM_b20477at 491.348 kb on + strandat 491.348 kb on + strandat 491.348 kb on + strandat 491.349 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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487,870 + SM_b20474 0.40 +1.2
487,944 + SM_b20474 0.73 -0.1
488,040 + SM_b20475 0.10 +0.0
488,040 + SM_b20475 0.10 +0.8
488,041 - SM_b20475 0.11 -0.0
488,119 - SM_b20475 0.26 +0.9
488,156 + SM_b20475 0.34 +2.1
488,216 - SM_b20475 0.46 +0.7
488,423 - SM_b20475 0.88 -2.5
488,423 - SM_b20475 0.88 +0.1
488,455 + +0.8
488,460 + -1.3
488,461 - +0.5
488,477 + -1.2
488,477 + +0.0
488,478 - -0.9
488,535 + +1.1
488,535 + +1.4
488,535 + +0.1
489,006 + SM_b20476 0.12 -2.0
489,006 + SM_b20476 0.12 +0.2
489,006 + SM_b20476 0.12 +0.5
489,006 + SM_b20476 0.12 -0.0
489,007 - SM_b20476 0.12 -0.8
489,007 - SM_b20476 0.12 -0.5
489,007 - SM_b20476 0.12 +1.1
489,096 + SM_b20476 0.17 +1.0
489,097 - SM_b20476 0.17 +0.7
489,098 + SM_b20476 0.18 -1.6
489,110 - SM_b20476 0.18 -1.7
489,276 - SM_b20476 0.29 +0.0
489,276 - SM_b20476 0.29 +1.8
489,276 - SM_b20476 0.29 +0.8
489,720 + SM_b20476 0.57 -1.0
489,832 - SM_b20476 0.64 -1.0
489,903 + SM_b20476 0.69 -0.2
489,903 + SM_b20476 0.69 +0.9
489,904 - SM_b20476 0.69 -0.2
489,904 - SM_b20476 0.69 +0.9
489,904 - SM_b20476 0.69 -1.4
489,904 - SM_b20476 0.69 +0.6
490,006 - SM_b20476 0.76 +1.0
490,164 + SM_b20476 0.86 -0.2
490,164 + SM_b20476 0.86 -0.6
490,387 - +1.2
490,462 - -1.3
490,475 + -1.2
490,476 - -0.8
490,476 - -0.0
490,589 + SM_b20477 0.13 +0.7
490,590 - SM_b20477 0.13 -1.1
490,922 + SM_b20477 0.48 -0.5
490,922 + SM_b20477 0.48 +1.5
490,923 - SM_b20477 0.48 -0.7
490,923 - SM_b20477 0.48 +1.2
490,923 - SM_b20477 0.48 -0.0
490,967 + SM_b20477 0.53 -0.8
490,967 + SM_b20477 0.53 +0.1
490,967 + SM_b20477 0.53 +0.2
490,968 - SM_b20477 0.53 -0.8
490,968 - SM_b20477 0.53 -1.5
491,058 + SM_b20477 0.62 -0.1
491,059 - SM_b20477 0.63 +0.6
491,059 - SM_b20477 0.63 +0.2
491,105 + SM_b20477 0.67 -1.5
491,105 + SM_b20477 0.67 -0.7
491,105 + SM_b20477 0.67 +0.2
491,105 + SM_b20477 0.67 -1.1
491,105 + SM_b20477 0.67 +0.0
491,105 + SM_b20477 0.67 +0.2
491,105 + SM_b20477 0.67 -1.6
491,106 - SM_b20477 0.68 -0.8
491,106 - SM_b20477 0.68 +0.3
491,154 - SM_b20477 0.73 -0.4
491,317 - SM_b20477 0.90 -0.2
491,348 + +0.5
491,348 + +0.3
491,348 + -0.1
491,349 - -0.8

Or see this region's nucleotide sequence