Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20430 and SM_b20431 overlap by 1 nucleotides SM_b20431 and SM_b20432 overlap by 4 nucleotides SM_b20432 and SM_b20433 overlap by 4 nucleotides
SM_b20430: SM_b20430 - amino acid ABC transporter permease, at 444,905 to 445,567
_b20430
SM_b20431: SM_b20431 - arylmalonate decarboxylase, at 445,567 to 446,352
_b20431
SM_b20432: SM_b20432 - threonine dehydratase, at 446,349 to 447,353
_b20432
SM_b20433: SM_b20433 - ectoine utilization protein EutC, at 447,350 to 448,339
_b20433
Position (kb) 446
447
448 Strain fitness (log2 ratio) -2
-1
0
1
2 at 445.359 kb on - strand, within SM_b20430 at 445.447 kb on + strand, within SM_b20430 at 445.448 kb on - strand, within SM_b20430 at 445.448 kb on - strand, within SM_b20430 at 445.451 kb on + strand, within SM_b20430 at 445.451 kb on + strand, within SM_b20430 at 445.452 kb on - strand, within SM_b20430 at 445.458 kb on - strand, within SM_b20430 at 445.458 kb on - strand, within SM_b20430 at 445.498 kb on + strand, within SM_b20430 at 445.633 kb on - strand at 445.669 kb on - strand, within SM_b20431 at 445.721 kb on - strand, within SM_b20431 at 445.721 kb on - strand, within SM_b20431 at 445.739 kb on - strand, within SM_b20431 at 445.840 kb on + strand, within SM_b20431 at 445.840 kb on + strand, within SM_b20431 at 445.841 kb on - strand, within SM_b20431 at 445.841 kb on - strand, within SM_b20431 at 445.997 kb on - strand, within SM_b20431 at 446.030 kb on - strand, within SM_b20431 at 446.251 kb on + strand, within SM_b20431 at 446.417 kb on - strand at 446.417 kb on - strand at 446.420 kb on + strand at 446.480 kb on - strand, within SM_b20432 at 446.508 kb on - strand, within SM_b20432 at 446.645 kb on + strand, within SM_b20432 at 446.884 kb on + strand, within SM_b20432 at 446.959 kb on + strand, within SM_b20432 at 446.959 kb on + strand, within SM_b20432 at 446.959 kb on + strand, within SM_b20432 at 446.959 kb on + strand, within SM_b20432 at 446.960 kb on - strand, within SM_b20432 at 447.121 kb on + strand, within SM_b20432 at 447.121 kb on + strand, within SM_b20432 at 447.121 kb on + strand, within SM_b20432 at 447.122 kb on - strand, within SM_b20432 at 447.122 kb on - strand, within SM_b20432 at 447.269 kb on + strand at 447.270 kb on - strand at 447.270 kb on - strand at 447.531 kb on - strand, within SM_b20433 at 447.531 kb on - strand, within SM_b20433 at 447.531 kb on - strand, within SM_b20433 at 447.956 kb on - strand, within SM_b20433 at 448.085 kb on + strand, within SM_b20433 at 448.086 kb on - strand, within SM_b20433 at 448.322 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 445,359 - SM_b20430 0.68 -0.5 445,447 + SM_b20430 0.82 -0.1 445,448 - SM_b20430 0.82 -0.3 445,448 - SM_b20430 0.82 +0.4 445,451 + SM_b20430 0.82 -1.4 445,451 + SM_b20430 0.82 +0.3 445,452 - SM_b20430 0.83 -0.6 445,458 - SM_b20430 0.83 +0.2 445,458 - SM_b20430 0.83 +0.3 445,498 + SM_b20430 0.89 +0.2 445,633 - -1.4 445,669 - SM_b20431 0.13 -0.3 445,721 - SM_b20431 0.20 +0.6 445,721 - SM_b20431 0.20 +0.1 445,739 - SM_b20431 0.22 +1.2 445,840 + SM_b20431 0.35 -0.1 445,840 + SM_b20431 0.35 +1.6 445,841 - SM_b20431 0.35 -0.0 445,841 - SM_b20431 0.35 -1.0 445,997 - SM_b20431 0.55 +0.5 446,030 - SM_b20431 0.59 -0.2 446,251 + SM_b20431 0.87 -0.4 446,417 - -0.5 446,417 - +0.2 446,420 + +0.4 446,480 - SM_b20432 0.13 -0.3 446,508 - SM_b20432 0.16 +0.0 446,645 + SM_b20432 0.29 -1.0 446,884 + SM_b20432 0.53 -0.5 446,959 + SM_b20432 0.61 -0.6 446,959 + SM_b20432 0.61 -1.6 446,959 + SM_b20432 0.61 +0.2 446,959 + SM_b20432 0.61 +0.1 446,960 - SM_b20432 0.61 -1.2 447,121 + SM_b20432 0.77 -0.3 447,121 + SM_b20432 0.77 -0.3 447,121 + SM_b20432 0.77 -0.3 447,122 - SM_b20432 0.77 +2.5 447,122 - SM_b20432 0.77 -0.4 447,269 + +0.5 447,270 - +0.2 447,270 - +0.1 447,531 - SM_b20433 0.18 -1.2 447,531 - SM_b20433 0.18 -0.1 447,531 - SM_b20433 0.18 -2.2 447,956 - SM_b20433 0.61 -0.1 448,085 + SM_b20433 0.74 +0.3 448,086 - SM_b20433 0.74 -1.0 448,322 - +0.8
Or see this region's nucleotide sequence