Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20378 and SM_b20379 are separated by 9 nucleotides SM_b20379 and SM_b20380 are separated by 30 nucleotides
SM_b20378: SM_b20378 - aldehyde dehydrogenase, at 388,482 to 389,945
_b20378
SM_b20379: SM_b20379 - aminotransferase, at 389,955 to 391,340
_b20379
SM_b20380: SM_b20380 - ABC transporter ATP-binding protein, at 391,371 to 392,420
_b20380
Position (kb) 389
390
391
392 Strain fitness (log2 ratio) -2
-1
0
1
2 at 388.965 kb on + strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 389.056 kb on + strand, within SM_b20378 at 389.057 kb on - strand, within SM_b20378 at 389.094 kb on - strand, within SM_b20378 at 389.094 kb on - strand, within SM_b20378 at 389.563 kb on + strand, within SM_b20378 at 389.878 kb on + strand at 389.879 kb on - strand at 389.880 kb on + strand at 389.917 kb on + strand at 389.917 kb on + strand at 389.994 kb on - strand at 389.994 kb on - strand at 389.994 kb on - strand at 390.177 kb on - strand, within SM_b20379 at 390.177 kb on - strand, within SM_b20379 at 390.288 kb on + strand, within SM_b20379 at 390.288 kb on + strand, within SM_b20379 at 390.288 kb on + strand, within SM_b20379 at 390.289 kb on - strand, within SM_b20379 at 390.317 kb on - strand, within SM_b20379 at 390.463 kb on + strand, within SM_b20379 at 390.464 kb on - strand, within SM_b20379 at 390.464 kb on - strand, within SM_b20379 at 390.464 kb on - strand, within SM_b20379 at 390.589 kb on + strand, within SM_b20379 at 390.590 kb on - strand, within SM_b20379 at 390.805 kb on - strand, within SM_b20379 at 390.889 kb on + strand, within SM_b20379 at 390.890 kb on - strand, within SM_b20379 at 390.947 kb on - strand, within SM_b20379 at 391.093 kb on + strand, within SM_b20379 at 391.093 kb on + strand, within SM_b20379 at 391.094 kb on - strand, within SM_b20379 at 391.094 kb on - strand, within SM_b20379 at 391.192 kb on + strand, within SM_b20379 at 391.219 kb on + strand at 391.219 kb on + strand at 391.219 kb on + strand at 391.219 kb on + strand at 391.219 kb on + strand at 391.219 kb on + strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.513 kb on + strand, within SM_b20380 at 391.747 kb on + strand, within SM_b20380 at 391.846 kb on + strand, within SM_b20380 at 391.846 kb on + strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 392.162 kb on - strand, within SM_b20380 at 392.162 kb on - strand, within SM_b20380 at 392.162 kb on - strand, within SM_b20380
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 388,965 + SM_b20378 0.33 +1.4 388,966 - SM_b20378 0.33 +0.7 388,966 - SM_b20378 0.33 +0.2 388,966 - SM_b20378 0.33 -0.3 388,966 - SM_b20378 0.33 -0.7 389,056 + SM_b20378 0.39 -0.4 389,057 - SM_b20378 0.39 -0.6 389,094 - SM_b20378 0.42 -0.4 389,094 - SM_b20378 0.42 -0.0 389,563 + SM_b20378 0.74 +0.1 389,878 + -0.1 389,879 - -1.2 389,880 + -0.3 389,917 + -0.6 389,917 + -1.0 389,994 - +1.3 389,994 - -0.4 389,994 - -1.1 390,177 - SM_b20379 0.16 -0.6 390,177 - SM_b20379 0.16 -0.4 390,288 + SM_b20379 0.24 +0.6 390,288 + SM_b20379 0.24 -0.1 390,288 + SM_b20379 0.24 -1.4 390,289 - SM_b20379 0.24 +0.4 390,317 - SM_b20379 0.26 -0.9 390,463 + SM_b20379 0.37 -0.7 390,464 - SM_b20379 0.37 -0.9 390,464 - SM_b20379 0.37 -0.5 390,464 - SM_b20379 0.37 -0.0 390,589 + SM_b20379 0.46 -1.1 390,590 - SM_b20379 0.46 -1.8 390,805 - SM_b20379 0.61 -0.8 390,889 + SM_b20379 0.67 +0.9 390,890 - SM_b20379 0.67 -0.3 390,947 - SM_b20379 0.72 +0.7 391,093 + SM_b20379 0.82 +0.1 391,093 + SM_b20379 0.82 -1.2 391,094 - SM_b20379 0.82 -0.7 391,094 - SM_b20379 0.82 -0.4 391,192 + SM_b20379 0.89 -0.1 391,219 + -1.2 391,219 + -1.2 391,219 + -0.2 391,219 + +1.8 391,219 + -1.0 391,219 + -0.9 391,220 - +0.3 391,220 - +0.7 391,220 - -1.0 391,220 - -1.2 391,220 - +0.3 391,220 - -1.1 391,220 - -1.0 391,513 + SM_b20380 0.14 +0.3 391,747 + SM_b20380 0.36 -0.8 391,846 + SM_b20380 0.45 -0.4 391,846 + SM_b20380 0.45 -0.2 391,847 - SM_b20380 0.45 -0.8 391,847 - SM_b20380 0.45 -1.8 391,847 - SM_b20380 0.45 -0.1 391,847 - SM_b20380 0.45 -0.2 391,847 - SM_b20380 0.45 -0.0 392,162 - SM_b20380 0.75 -1.1 392,162 - SM_b20380 0.75 -0.5 392,162 - SM_b20380 0.75 +0.1
Or see this region's nucleotide sequence