Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20346 and SM_b20347 are separated by 92 nucleotides SM_b20347 and SM_b20348 are separated by 186 nucleotides
SM_b20346: SM_b20346 - efflux protein, at 353,526 to 354,680
_b20346
SM_b20347: SM_b20347 - transcriptional regulator, at 354,773 to 355,381
_b20347
SM_b20348: SM_b20348 - hypothetical protein, at 355,568 to 356,395
_b20348
Position (kb) 354
355
356 Strain fitness (log2 ratio) -2
-1
0
1
2 at 354.012 kb on - strand, within SM_b20346 at 354.018 kb on + strand, within SM_b20346 at 354.018 kb on + strand, within SM_b20346 at 354.019 kb on - strand, within SM_b20346 at 354.019 kb on - strand, within SM_b20346 at 354.114 kb on + strand, within SM_b20346 at 354.114 kb on + strand, within SM_b20346 at 354.155 kb on + strand, within SM_b20346 at 354.157 kb on + strand, within SM_b20346 at 354.157 kb on + strand, within SM_b20346 at 354.157 kb on + strand, within SM_b20346 at 354.158 kb on - strand, within SM_b20346 at 354.162 kb on + strand, within SM_b20346 at 354.163 kb on - strand, within SM_b20346 at 354.413 kb on + strand, within SM_b20346 at 354.414 kb on - strand, within SM_b20346 at 354.414 kb on - strand, within SM_b20346 at 354.509 kb on - strand, within SM_b20346 at 354.564 kb on + strand, within SM_b20346 at 354.565 kb on - strand at 354.687 kb on + strand at 354.989 kb on - strand, within SM_b20347 at 354.989 kb on - strand, within SM_b20347 at 354.989 kb on - strand, within SM_b20347 at 355.224 kb on + strand, within SM_b20347 at 355.285 kb on - strand, within SM_b20347 at 355.290 kb on + strand, within SM_b20347 at 355.480 kb on - strand at 355.480 kb on - strand at 355.480 kb on - strand at 355.551 kb on + strand at 355.552 kb on - strand at 355.808 kb on - strand, within SM_b20348 at 355.808 kb on - strand, within SM_b20348 at 355.856 kb on + strand, within SM_b20348 at 355.856 kb on + strand, within SM_b20348 at 355.888 kb on + strand, within SM_b20348 at 355.888 kb on + strand, within SM_b20348 at 355.889 kb on - strand, within SM_b20348 at 355.889 kb on - strand, within SM_b20348 at 355.892 kb on + strand, within SM_b20348 at 355.893 kb on - strand, within SM_b20348 at 356.028 kb on - strand, within SM_b20348 at 356.028 kb on - strand, within SM_b20348 at 356.028 kb on - strand at 356.028 kb on - strand, within SM_b20348
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 354,012 - SM_b20346 0.42 +0.5 354,018 + SM_b20346 0.43 +0.4 354,018 + SM_b20346 0.43 -0.7 354,019 - SM_b20346 0.43 -0.5 354,019 - SM_b20346 0.43 +1.2 354,114 + SM_b20346 0.51 +0.1 354,114 + SM_b20346 0.51 -0.9 354,155 + SM_b20346 0.54 +2.0 354,157 + SM_b20346 0.55 +0.2 354,157 + SM_b20346 0.55 +0.1 354,157 + SM_b20346 0.55 -0.2 354,158 - SM_b20346 0.55 +0.3 354,162 + SM_b20346 0.55 +0.4 354,163 - SM_b20346 0.55 +1.0 354,413 + SM_b20346 0.77 -1.5 354,414 - SM_b20346 0.77 +0.3 354,414 - SM_b20346 0.77 +0.2 354,509 - SM_b20346 0.85 +0.5 354,564 + SM_b20346 0.90 -1.5 354,565 - +0.3 354,687 + +0.4 354,989 - SM_b20347 0.35 -2.0 354,989 - SM_b20347 0.35 -1.6 354,989 - SM_b20347 0.35 -1.8 355,224 + SM_b20347 0.74 -0.8 355,285 - SM_b20347 0.84 -0.6 355,290 + SM_b20347 0.85 +0.9 355,480 - +0.6 355,480 - +0.4 355,480 - -0.5 355,551 + +0.3 355,552 - +0.1 355,808 - SM_b20348 0.29 -1.0 355,808 - SM_b20348 0.29 -1.7 355,856 + SM_b20348 0.35 +0.4 355,856 + SM_b20348 0.35 +1.7 355,888 + SM_b20348 0.39 +0.3 355,888 + SM_b20348 0.39 +0.6 355,889 - SM_b20348 0.39 +0.5 355,889 - SM_b20348 0.39 +0.5 355,892 + SM_b20348 0.39 -0.4 355,893 - SM_b20348 0.39 +1.0 356,028 - SM_b20348 0.56 -0.6 356,028 - SM_b20348 0.56 +0.2 356,028 - +1.8 356,028 - SM_b20348 0.56 +1.2
Or see this region's nucleotide sequence