Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20277

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20275 and SM_b20276 are separated by 91 nucleotidesSM_b20276 and SM_b20277 overlap by 4 nucleotidesSM_b20277 and SM_b20278 are separated by 308 nucleotidesSM_b20278 and SM_b20279 are separated by 1 nucleotides SM_b20275: SM_b20275 - hypothetical protein, at 279,463 to 280,323 _b20275 SM_b20276: SM_b20276 - transcriptional regulator, at 280,415 to 281,305 _b20276 SM_b20277: SM_b20277 - hypothetical protein, at 281,302 to 282,645 _b20277 SM_b20278: SM_b20278 - hypothetical protein, at 282,954 to 283,532 _b20278 SM_b20279: SM_b20279 - hypothetical protein, at 283,534 to 284,037 _b20279 Position (kb) 281 282 283Strain fitness (log2 ratio) -2 -1 0 1 2at 280.406 kb on - strandat 280.494 kb on - strandat 280.495 kb on + strandat 280.610 kb on + strand, within SM_b20276at 280.611 kb on - strand, within SM_b20276at 280.611 kb on - strand, within SM_b20276at 280.631 kb on + strand, within SM_b20276at 280.884 kb on - strand, within SM_b20276at 280.885 kb on + strand, within SM_b20276at 280.885 kb on + strand, within SM_b20276at 280.886 kb on - strand, within SM_b20276at 281.005 kb on + strand, within SM_b20276at 281.033 kb on + strandat 281.033 kb on + strand, within SM_b20276at 281.034 kb on - strand, within SM_b20276at 281.034 kb on - strand, within SM_b20276at 281.396 kb on - strandat 281.484 kb on + strand, within SM_b20277at 281.487 kb on - strand, within SM_b20277at 281.487 kb on - strand, within SM_b20277at 281.487 kb on - strand, within SM_b20277at 281.487 kb on - strand, within SM_b20277at 281.491 kb on + strand, within SM_b20277at 281.491 kb on + strand, within SM_b20277at 281.491 kb on + strand, within SM_b20277at 281.491 kb on + strand, within SM_b20277at 281.491 kb on + strand, within SM_b20277at 281.491 kb on + strand, within SM_b20277at 281.492 kb on - strand, within SM_b20277at 281.492 kb on - strand, within SM_b20277at 281.492 kb on - strand, within SM_b20277at 281.492 kb on - strand, within SM_b20277at 281.581 kb on + strand, within SM_b20277at 281.582 kb on - strand, within SM_b20277at 281.695 kb on + strand, within SM_b20277at 281.695 kb on + strand, within SM_b20277at 281.695 kb on + strand, within SM_b20277at 281.696 kb on - strand, within SM_b20277at 281.696 kb on - strand, within SM_b20277at 281.839 kb on + strand, within SM_b20277at 281.840 kb on - strand, within SM_b20277at 281.998 kb on + strand, within SM_b20277at 281.998 kb on + strand, within SM_b20277at 281.999 kb on - strand, within SM_b20277at 282.143 kb on + strand, within SM_b20277at 282.143 kb on + strand, within SM_b20277at 282.207 kb on + strand, within SM_b20277at 282.207 kb on + strand, within SM_b20277at 282.208 kb on - strand, within SM_b20277at 282.208 kb on - strand, within SM_b20277at 282.211 kb on + strand, within SM_b20277at 282.211 kb on + strand, within SM_b20277at 282.211 kb on + strand, within SM_b20277at 282.212 kb on - strand, within SM_b20277at 282.212 kb on - strand, within SM_b20277at 282.212 kb on - strand, within SM_b20277at 282.214 kb on - strand, within SM_b20277at 282.491 kb on - strand, within SM_b20277at 282.944 kb on + strandat 282.944 kb on + strandat 283.075 kb on + strand, within SM_b20278at 283.075 kb on + strand, within SM_b20278at 283.076 kb on - strand, within SM_b20278at 283.180 kb on + strand, within SM_b20278at 283.222 kb on + strand, within SM_b20278at 283.322 kb on + strand, within SM_b20278at 283.323 kb on - strand, within SM_b20278at 283.323 kb on - strand, within SM_b20278at 283.323 kb on - strand, within SM_b20278at 283.323 kb on - strand, within SM_b20278at 283.324 kb on + strand, within SM_b20278at 283.324 kb on + strand, within SM_b20278at 283.325 kb on - strand, within SM_b20278at 283.325 kb on - strand, within SM_b20278at 283.325 kb on - strand, within SM_b20278at 283.349 kb on + strand, within SM_b20278at 283.350 kb on - strand, within SM_b20278at 283.409 kb on + strand, within SM_b20278at 283.468 kb on - strand, within SM_b20278at 283.480 kb on + strandat 283.481 kb on - strandat 283.481 kb on - strandat 283.481 kb on - strandat 283.481 kb on - strandat 283.618 kb on - strand, within SM_b20279

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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280,406 - +1.0
280,494 - -0.0
280,495 + +1.0
280,610 + SM_b20276 0.22 -1.4
280,611 - SM_b20276 0.22 -0.2
280,611 - SM_b20276 0.22 +1.0
280,631 + SM_b20276 0.24 +0.1
280,884 - SM_b20276 0.53 -0.5
280,885 + SM_b20276 0.53 -0.5
280,885 + SM_b20276 0.53 -1.4
280,886 - SM_b20276 0.53 -0.2
281,005 + SM_b20276 0.66 -0.0
281,033 + +1.8
281,033 + SM_b20276 0.69 +0.7
281,034 - SM_b20276 0.69 +0.8
281,034 - SM_b20276 0.69 -0.6
281,396 - -1.0
281,484 + SM_b20277 0.14 -0.0
281,487 - SM_b20277 0.14 -0.2
281,487 - SM_b20277 0.14 +0.2
281,487 - SM_b20277 0.14 -0.4
281,487 - SM_b20277 0.14 +0.8
281,491 + SM_b20277 0.14 -0.1
281,491 + SM_b20277 0.14 -0.6
281,491 + SM_b20277 0.14 -0.3
281,491 + SM_b20277 0.14 -0.1
281,491 + SM_b20277 0.14 +0.1
281,491 + SM_b20277 0.14 +0.3
281,492 - SM_b20277 0.14 +1.0
281,492 - SM_b20277 0.14 -1.2
281,492 - SM_b20277 0.14 -0.6
281,492 - SM_b20277 0.14 -0.9
281,581 + SM_b20277 0.21 -0.2
281,582 - SM_b20277 0.21 -0.2
281,695 + SM_b20277 0.29 +0.3
281,695 + SM_b20277 0.29 -0.0
281,695 + SM_b20277 0.29 -0.8
281,696 - SM_b20277 0.29 -1.3
281,696 - SM_b20277 0.29 -0.5
281,839 + SM_b20277 0.40 -0.2
281,840 - SM_b20277 0.40 +1.0
281,998 + SM_b20277 0.52 -1.0
281,998 + SM_b20277 0.52 +0.3
281,999 - SM_b20277 0.52 -0.4
282,143 + SM_b20277 0.63 +0.7
282,143 + SM_b20277 0.63 +1.0
282,207 + SM_b20277 0.67 +0.1
282,207 + SM_b20277 0.67 -0.2
282,208 - SM_b20277 0.67 -1.2
282,208 - SM_b20277 0.67 +0.2
282,211 + SM_b20277 0.68 -0.2
282,211 + SM_b20277 0.68 -0.6
282,211 + SM_b20277 0.68 -1.0
282,212 - SM_b20277 0.68 -0.4
282,212 - SM_b20277 0.68 -0.6
282,212 - SM_b20277 0.68 +0.3
282,214 - SM_b20277 0.68 +1.4
282,491 - SM_b20277 0.88 +1.8
282,944 + +0.0
282,944 + -0.6
283,075 + SM_b20278 0.21 -0.7
283,075 + SM_b20278 0.21 -0.3
283,076 - SM_b20278 0.21 -1.0
283,180 + SM_b20278 0.39 +0.6
283,222 + SM_b20278 0.46 -1.9
283,322 + SM_b20278 0.64 -0.5
283,323 - SM_b20278 0.64 +0.1
283,323 - SM_b20278 0.64 +0.1
283,323 - SM_b20278 0.64 +0.1
283,323 - SM_b20278 0.64 +0.2
283,324 + SM_b20278 0.64 +0.4
283,324 + SM_b20278 0.64 +0.3
283,325 - SM_b20278 0.64 +0.0
283,325 - SM_b20278 0.64 +0.7
283,325 - SM_b20278 0.64 +1.6
283,349 + SM_b20278 0.68 -0.6
283,350 - SM_b20278 0.68 -1.0
283,409 + SM_b20278 0.79 +0.5
283,468 - SM_b20278 0.89 -2.2
283,480 + -1.8
283,481 - -1.4
283,481 - +1.3
283,481 - +1.1
283,481 - +0.3
283,618 - SM_b20279 0.17 +1.1

Or see this region's nucleotide sequence