Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20174 and SM_b20175 overlap by 44 nucleotides SM_b20175 and SM_b20176 overlap by 4 nucleotides SM_b20176 and SM_b20177 are separated by 173 nucleotides SM_b20177 and SM_b20178 are separated by 126 nucleotides
SM_b20174: SM_b20174 - cytochrome c protein, at 192,858 to 193,388
_b20174
SM_b20175: SM_b20175 - hypothetical protein, at 193,345 to 194,211
_b20175
SM_b20176: SM_b20176 - hypothetical protein, at 194,208 to 194,753
_b20176
SM_b20177: SM_b20177 - hypothetical protein, at 194,927 to 195,448
_b20177
SM_b20178: SM_b20178 - hypothetical protein, at 195,575 to 196,762
_b20178
Position (kb) 194
195 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 193.257 kb on + strand, within SM_b20174 at 193.258 kb on - strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.386 kb on + strand at 193.386 kb on + strand at 193.461 kb on - strand, within SM_b20175 at 193.588 kb on + strand, within SM_b20175 at 193.589 kb on - strand, within SM_b20175 at 193.702 kb on + strand, within SM_b20175 at 193.703 kb on - strand, within SM_b20175 at 193.705 kb on + strand, within SM_b20175 at 193.705 kb on + strand, within SM_b20175 at 193.706 kb on - strand, within SM_b20175 at 193.706 kb on - strand, within SM_b20175 at 193.706 kb on - strand, within SM_b20175 at 193.706 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.717 kb on + strand, within SM_b20175 at 193.718 kb on - strand, within SM_b20175 at 193.718 kb on - strand, within SM_b20175 at 193.718 kb on - strand, within SM_b20175 at 193.718 kb on - strand, within SM_b20175 at 193.830 kb on + strand, within SM_b20175 at 193.831 kb on - strand, within SM_b20175 at 193.867 kb on + strand, within SM_b20175 at 193.868 kb on - strand, within SM_b20175 at 194.050 kb on + strand, within SM_b20175 at 194.407 kb on + strand, within SM_b20176 at 194.488 kb on + strand, within SM_b20176 at 194.488 kb on + strand, within SM_b20176 at 194.539 kb on - strand, within SM_b20176 at 194.652 kb on + strand, within SM_b20176 at 194.658 kb on + strand, within SM_b20176 at 194.658 kb on + strand, within SM_b20176 at 194.659 kb on - strand, within SM_b20176 at 194.659 kb on - strand, within SM_b20176 at 194.822 kb on - strand at 194.959 kb on - strand at 194.959 kb on - strand at 195.065 kb on + strand, within SM_b20177 at 195.070 kb on + strand, within SM_b20177 at 195.071 kb on - strand, within SM_b20177 at 195.108 kb on + strand, within SM_b20177 at 195.108 kb on + strand, within SM_b20177 at 195.295 kb on + strand, within SM_b20177 at 195.296 kb on - strand, within SM_b20177 at 195.298 kb on - strand, within SM_b20177 at 195.298 kb on - strand, within SM_b20177 at 195.345 kb on - strand, within SM_b20177 at 195.345 kb on - strand, within SM_b20177 at 195.482 kb on + strand at 195.483 kb on - strand at 195.491 kb on + strand at 195.492 kb on - strand at 195.514 kb on - strand at 195.524 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 193,257 + SM_b20174 0.75 -0.3 193,258 - SM_b20174 0.75 +1.3 193,272 + SM_b20174 0.78 -0.5 193,272 + SM_b20174 0.78 -0.5 193,272 + SM_b20174 0.78 -1.0 193,272 + SM_b20174 0.78 +0.5 193,272 + SM_b20174 0.78 -0.3 193,272 + SM_b20174 0.78 -1.1 193,272 + SM_b20174 0.78 -0.0 193,272 + SM_b20174 0.78 -0.1 193,273 - SM_b20174 0.78 +0.6 193,273 - SM_b20174 0.78 -0.1 193,273 - SM_b20174 0.78 -0.3 193,273 - SM_b20174 0.78 -1.3 193,273 - SM_b20174 0.78 +0.5 193,273 - SM_b20174 0.78 +5.2 193,273 - SM_b20174 0.78 -1.2 193,386 + +0.1 193,386 + +0.8 193,461 - SM_b20175 0.13 -0.3 193,588 + SM_b20175 0.28 +0.7 193,589 - SM_b20175 0.28 +0.5 193,702 + SM_b20175 0.41 -0.1 193,703 - SM_b20175 0.41 +1.5 193,705 + SM_b20175 0.42 -0.4 193,705 + SM_b20175 0.42 -1.7 193,706 - SM_b20175 0.42 +0.3 193,706 - SM_b20175 0.42 +0.4 193,706 - SM_b20175 0.42 +0.4 193,706 - SM_b20175 0.42 +0.4 193,708 - SM_b20175 0.42 -0.5 193,708 - SM_b20175 0.42 +1.0 193,708 - SM_b20175 0.42 -0.8 193,708 - SM_b20175 0.42 +0.9 193,708 - SM_b20175 0.42 +1.4 193,708 - SM_b20175 0.42 +1.3 193,708 - SM_b20175 0.42 -0.0 193,717 + SM_b20175 0.43 -0.9 193,718 - SM_b20175 0.43 +0.1 193,718 - SM_b20175 0.43 +1.3 193,718 - SM_b20175 0.43 +0.1 193,718 - SM_b20175 0.43 +0.0 193,830 + SM_b20175 0.56 -0.1 193,831 - SM_b20175 0.56 +0.5 193,867 + SM_b20175 0.60 -0.3 193,868 - SM_b20175 0.60 +0.7 194,050 + SM_b20175 0.81 -0.7 194,407 + SM_b20176 0.36 -0.5 194,488 + SM_b20176 0.51 +0.7 194,488 + SM_b20176 0.51 +0.1 194,539 - SM_b20176 0.61 +2.3 194,652 + SM_b20176 0.81 +0.6 194,658 + SM_b20176 0.82 -0.2 194,658 + SM_b20176 0.82 +1.1 194,659 - SM_b20176 0.83 +2.9 194,659 - SM_b20176 0.83 -0.5 194,822 - -1.2 194,959 - -0.4 194,959 - -0.5 195,065 + SM_b20177 0.26 +0.2 195,070 + SM_b20177 0.27 -0.5 195,071 - SM_b20177 0.28 +0.9 195,108 + SM_b20177 0.35 -0.0 195,108 + SM_b20177 0.35 -0.3 195,295 + SM_b20177 0.70 +0.5 195,296 - SM_b20177 0.71 +0.4 195,298 - SM_b20177 0.71 +0.3 195,298 - SM_b20177 0.71 +0.9 195,345 - SM_b20177 0.80 -0.7 195,345 - SM_b20177 0.80 -0.4 195,482 + +0.6 195,483 - +1.3 195,491 + -0.0 195,492 - -0.2 195,514 - -0.7 195,524 + -0.1
Or see this region's nucleotide sequence