Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20158 and SM_b20159 are separated by 53 nucleotides SM_b20159 and SM_b22005 are separated by 678 nucleotides
SM_b20158: SM_b20158 - ABC transporter substrate-binding protein, at 176,427 to 177,551
_b20158
SM_b20159: SM_b20159 - inositol monophosphatase, at 177,605 to 178,489
_b20159
SM_b22005: SM_b22005 - hypothetical protein, at 179,168 to 179,536
_b22005
Position (kb) 177
178
179 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 176.623 kb on - strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.781 kb on + strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.782 kb on - strand, within SM_b20158 at 176.865 kb on + strand, within SM_b20158 at 176.880 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.905 kb on + strand, within SM_b20158 at 176.973 kb on + strand, within SM_b20158 at 176.974 kb on - strand, within SM_b20158 at 176.974 kb on - strand, within SM_b20158 at 176.975 kb on + strand, within SM_b20158 at 177.231 kb on + strand, within SM_b20158 at 177.279 kb on + strand, within SM_b20158 at 177.279 kb on + strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.280 kb on - strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.345 kb on + strand, within SM_b20158 at 177.346 kb on - strand, within SM_b20158 at 177.346 kb on - strand, within SM_b20158 at 177.348 kb on - strand, within SM_b20158 at 177.752 kb on + strand, within SM_b20159 at 177.753 kb on - strand, within SM_b20159 at 177.777 kb on + strand, within SM_b20159 at 177.777 kb on + strand, within SM_b20159 at 177.778 kb on - strand, within SM_b20159 at 177.820 kb on + strand, within SM_b20159 at 177.821 kb on - strand, within SM_b20159 at 178.002 kb on - strand, within SM_b20159 at 178.338 kb on - strand, within SM_b20159 at 178.397 kb on + strand, within SM_b20159 at 178.612 kb on - strand at 178.740 kb on + strand at 178.810 kb on - strand at 178.866 kb on + strand at 178.869 kb on + strand at 178.869 kb on + strand at 178.870 kb on - strand at 178.870 kb on - strand at 178.870 kb on - strand at 178.897 kb on + strand at 178.897 kb on + strand at 178.917 kb on + strand at 178.918 kb on - strand at 179.000 kb on - strand at 179.000 kb on - strand at 179.088 kb on + strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 176,623 - SM_b20158 0.17 -0.0 176,781 + SM_b20158 0.31 +2.5 176,781 + SM_b20158 0.31 -0.4 176,781 + SM_b20158 0.31 +0.5 176,782 - SM_b20158 0.32 +1.5 176,782 - SM_b20158 0.32 -2.0 176,782 - SM_b20158 0.32 -0.7 176,865 + SM_b20158 0.39 +0.3 176,880 + SM_b20158 0.40 +1.0 176,905 + SM_b20158 0.42 +0.6 176,905 + SM_b20158 0.42 -1.7 176,905 + SM_b20158 0.42 -0.4 176,973 + SM_b20158 0.49 +0.3 176,974 - SM_b20158 0.49 +0.6 176,974 - SM_b20158 0.49 -0.7 176,975 + SM_b20158 0.49 -0.6 177,231 + SM_b20158 0.71 +0.3 177,279 + SM_b20158 0.76 -0.6 177,279 + SM_b20158 0.76 -0.5 177,280 - SM_b20158 0.76 -0.2 177,280 - SM_b20158 0.76 -0.4 177,280 - SM_b20158 0.76 +1.7 177,280 - SM_b20158 0.76 +0.6 177,345 + SM_b20158 0.82 +0.1 177,345 + SM_b20158 0.82 -0.1 177,345 + SM_b20158 0.82 -0.2 177,346 - SM_b20158 0.82 +2.0 177,346 - SM_b20158 0.82 -0.6 177,348 - SM_b20158 0.82 -0.1 177,752 + SM_b20159 0.17 -0.5 177,753 - SM_b20159 0.17 -0.1 177,777 + SM_b20159 0.19 -0.8 177,777 + SM_b20159 0.19 -0.8 177,778 - SM_b20159 0.20 -3.2 177,820 + SM_b20159 0.24 -0.3 177,821 - SM_b20159 0.24 +0.6 178,002 - SM_b20159 0.45 -4.0 178,338 - SM_b20159 0.83 +0.1 178,397 + SM_b20159 0.89 -0.9 178,612 - +0.3 178,740 + +0.4 178,810 - +0.4 178,866 + -0.7 178,869 + -0.9 178,869 + +1.5 178,870 - -0.1 178,870 - +0.6 178,870 - +0.7 178,897 + -0.9 178,897 + +0.2 178,917 + -0.4 178,918 - +0.2 179,000 - +1.5 179,000 - +0.2 179,088 + -1.6 179,089 - +0.3 179,089 - +0.8 179,089 - +0.1 179,089 - +0.9 179,089 - -0.9 179,089 - -0.4
Or see this region's nucleotide sequence