Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20143 and SM_b20144 are separated by 85 nucleotides SM_b20144 and SM_b20145 are separated by 314 nucleotides
SM_b20143: SM_b20143 - oligopeptide ABC transporter permease, at 157,386 to 158,300
_b20143
SM_b20144: SM_b20144 - ABC transporter oligopeptide-binding protein, at 158,386 to 159,891
_b20144
SM_b20145: SM_b20145 - hypothetical protein, at 160,206 to 161,393
_b20145
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 157.417 kb on + strand at 157.417 kb on + strand at 157.551 kb on - strand, within SM_b20143 at 158.232 kb on + strand at 158.232 kb on + strand at 158.233 kb on - strand at 158.522 kb on + strand at 158.522 kb on + strand at 158.639 kb on + strand, within SM_b20144 at 158.735 kb on + strand, within SM_b20144 at 158.735 kb on + strand, within SM_b20144 at 158.736 kb on - strand, within SM_b20144 at 158.738 kb on + strand, within SM_b20144 at 158.739 kb on - strand, within SM_b20144 at 158.879 kb on - strand, within SM_b20144 at 158.936 kb on + strand, within SM_b20144 at 159.096 kb on + strand, within SM_b20144 at 159.116 kb on + strand, within SM_b20144 at 159.117 kb on - strand, within SM_b20144 at 159.138 kb on - strand, within SM_b20144 at 159.344 kb on + strand, within SM_b20144 at 159.345 kb on - strand, within SM_b20144 at 159.345 kb on - strand, within SM_b20144 at 159.460 kb on + strand, within SM_b20144 at 159.509 kb on + strand, within SM_b20144 at 159.561 kb on - strand, within SM_b20144 at 159.954 kb on + strand at 159.954 kb on + strand at 159.955 kb on - strand at 159.955 kb on - strand at 160.627 kb on - strand, within SM_b20145 at 160.652 kb on + strand, within SM_b20145 at 160.652 kb on + strand, within SM_b20145
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 157,417 + -0.2 157,417 + -1.0 157,551 - SM_b20143 0.18 -0.2 158,232 + -0.4 158,232 + -0.4 158,233 - +0.3 158,522 + -0.3 158,522 + -0.5 158,639 + SM_b20144 0.17 +0.2 158,735 + SM_b20144 0.23 +0.0 158,735 + SM_b20144 0.23 -0.2 158,736 - SM_b20144 0.23 +0.4 158,738 + SM_b20144 0.23 +0.7 158,739 - SM_b20144 0.23 +0.2 158,879 - SM_b20144 0.33 +0.4 158,936 + SM_b20144 0.37 +0.6 159,096 + SM_b20144 0.47 +0.3 159,116 + SM_b20144 0.48 +0.9 159,117 - SM_b20144 0.49 +0.2 159,138 - SM_b20144 0.50 +1.5 159,344 + SM_b20144 0.64 +0.1 159,345 - SM_b20144 0.64 +1.2 159,345 - SM_b20144 0.64 -1.8 159,460 + SM_b20144 0.71 -0.1 159,509 + SM_b20144 0.75 +0.9 159,561 - SM_b20144 0.78 +0.7 159,954 + +0.4 159,954 + -0.1 159,955 - +0.3 159,955 - +0.4 160,627 - SM_b20145 0.35 +0.2 160,652 + SM_b20145 0.38 -0.4 160,652 + SM_b20145 0.38 -0.1
Or see this region's nucleotide sequence