Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20102 and SM_b20103 are separated by 214 nucleotides SM_b20103 and SM_b20104 are separated by 75 nucleotides SM_b20104 and SM_b20105 are separated by 101 nucleotides
SM_b20102: SM_b20102 - acetoin catabolism regulatory protein, at 111,176 to 113,059
_b20102
SM_b20103: SM_b20103 - FAD-dependent oxidoreductase, at 113,274 to 115,076
_b20103
SM_b20104: SM_b20104 - hypothetical protein, at 115,152 to 115,910
_b20104
SM_b20105: SM_b20105 - transcriptional regulator, at 116,012 to 116,644
_b20105
Position (kb)
113
114
115
116 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 112.643 kb on + strand, within SM_b20102 at 112.644 kb on - strand, within SM_b20102 at 112.752 kb on + strand, within SM_b20102 at 112.753 kb on - strand, within SM_b20102 at 113.269 kb on + strand at 113.385 kb on + strand at 113.711 kb on + strand, within SM_b20103 at 113.758 kb on - strand, within SM_b20103 at 113.758 kb on - strand, within SM_b20103 at 113.895 kb on + strand, within SM_b20103 at 113.895 kb on + strand, within SM_b20103 at 113.928 kb on + strand, within SM_b20103 at 113.929 kb on - strand, within SM_b20103 at 113.943 kb on + strand, within SM_b20103 at 113.944 kb on - strand, within SM_b20103 at 113.944 kb on - strand, within SM_b20103 at 113.944 kb on - strand, within SM_b20103 at 113.945 kb on + strand, within SM_b20103 at 113.946 kb on - strand, within SM_b20103 at 114.012 kb on + strand, within SM_b20103 at 114.012 kb on + strand, within SM_b20103 at 114.013 kb on - strand, within SM_b20103 at 114.013 kb on - strand, within SM_b20103 at 114.013 kb on - strand, within SM_b20103 at 114.013 kb on - strand, within SM_b20103 at 114.013 kb on - strand, within SM_b20103 at 114.014 kb on + strand, within SM_b20103 at 114.015 kb on - strand, within SM_b20103 at 114.037 kb on - strand, within SM_b20103 at 114.037 kb on - strand, within SM_b20103 at 114.415 kb on - strand, within SM_b20103 at 114.549 kb on + strand, within SM_b20103 at 114.618 kb on + strand, within SM_b20103 at 114.619 kb on - strand, within SM_b20103 at 114.642 kb on + strand, within SM_b20103 at 114.642 kb on + strand, within SM_b20103 at 114.642 kb on + strand, within SM_b20103 at 114.643 kb on - strand, within SM_b20103 at 114.643 kb on - strand, within SM_b20103 at 114.643 kb on - strand, within SM_b20103 at 114.645 kb on - strand, within SM_b20103 at 114.777 kb on + strand, within SM_b20103 at 114.985 kb on - strand at 114.994 kb on - strand at 115.031 kb on - strand at 115.031 kb on - strand at 115.045 kb on - strand at 115.254 kb on - strand, within SM_b20104 at 115.367 kb on + strand, within SM_b20104 at 115.367 kb on + strand, within SM_b20104 at 115.367 kb on + strand, within SM_b20104 at 115.368 kb on - strand, within SM_b20104 at 115.369 kb on + strand, within SM_b20104 at 115.369 kb on + strand, within SM_b20104 at 115.369 kb on + strand, within SM_b20104 at 115.369 kb on + strand, within SM_b20104 at 115.370 kb on - strand, within SM_b20104 at 115.370 kb on - strand, within SM_b20104 at 115.370 kb on - strand, within SM_b20104 at 115.423 kb on - strand, within SM_b20104 at 115.440 kb on - strand, within SM_b20104 at 115.541 kb on + strand, within SM_b20104 at 115.541 kb on + strand at 115.541 kb on + strand, within SM_b20104 at 115.541 kb on + strand, within SM_b20104 at 115.542 kb on - strand, within SM_b20104 at 115.580 kb on - strand, within SM_b20104 at 115.588 kb on - strand, within SM_b20104 at 115.900 kb on + strand at 115.901 kb on - strand at 115.983 kb on + strand at 115.983 kb on + strand at 115.984 kb on - strand at 115.984 kb on - strand at 116.013 kb on + strand at 116.024 kb on + strand at 116.024 kb on + strand at 116.025 kb on - strand at 116.025 kb on - strand at 116.025 kb on - strand at 116.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 112,643 + SM_b20102 0.78 +0.4 112,644 - SM_b20102 0.78 +0.8 112,752 + SM_b20102 0.84 +0.6 112,753 - SM_b20102 0.84 +0.2 113,269 + +0.6 113,385 + -0.1 113,711 + SM_b20103 0.24 +0.9 113,758 - SM_b20103 0.27 +0.2 113,758 - SM_b20103 0.27 +0.4 113,895 + SM_b20103 0.34 -1.0 113,895 + SM_b20103 0.34 -0.8 113,928 + SM_b20103 0.36 +2.0 113,929 - SM_b20103 0.36 +0.6 113,943 + SM_b20103 0.37 +0.4 113,944 - SM_b20103 0.37 -0.2 113,944 - SM_b20103 0.37 -0.4 113,944 - SM_b20103 0.37 -0.4 113,945 + SM_b20103 0.37 +0.8 113,946 - SM_b20103 0.37 +0.6 114,012 + SM_b20103 0.41 +0.7 114,012 + SM_b20103 0.41 +0.4 114,013 - SM_b20103 0.41 +0.1 114,013 - SM_b20103 0.41 +1.3 114,013 - SM_b20103 0.41 -0.1 114,013 - SM_b20103 0.41 +1.5 114,013 - SM_b20103 0.41 +1.0 114,014 + SM_b20103 0.41 +0.3 114,015 - SM_b20103 0.41 +0.5 114,037 - SM_b20103 0.42 -0.8 114,037 - SM_b20103 0.42 +1.6 114,415 - SM_b20103 0.63 -0.2 114,549 + SM_b20103 0.71 -0.1 114,618 + SM_b20103 0.75 +0.4 114,619 - SM_b20103 0.75 +0.3 114,642 + SM_b20103 0.76 +2.0 114,642 + SM_b20103 0.76 +1.7 114,642 + SM_b20103 0.76 -0.9 114,643 - SM_b20103 0.76 -0.7 114,643 - SM_b20103 0.76 +0.3 114,643 - SM_b20103 0.76 +1.4 114,645 - SM_b20103 0.76 +0.4 114,777 + SM_b20103 0.83 -0.3 114,985 - +0.5 114,994 - +0.4 115,031 - +0.1 115,031 - +0.6 115,045 - +0.9 115,254 - SM_b20104 0.13 -0.6 115,367 + SM_b20104 0.28 -0.8 115,367 + SM_b20104 0.28 -0.7 115,367 + SM_b20104 0.28 -0.7 115,368 - SM_b20104 0.28 -0.0 115,369 + SM_b20104 0.29 +1.2 115,369 + SM_b20104 0.29 +0.1 115,369 + SM_b20104 0.29 -0.5 115,369 + SM_b20104 0.29 +0.0 115,370 - SM_b20104 0.29 +0.6 115,370 - SM_b20104 0.29 +0.6 115,370 - SM_b20104 0.29 -0.9 115,423 - SM_b20104 0.36 -0.4 115,440 - SM_b20104 0.38 -0.8 115,541 + SM_b20104 0.51 +0.3 115,541 + +0.3 115,541 + SM_b20104 0.51 -0.3 115,541 + SM_b20104 0.51 -0.3 115,542 - SM_b20104 0.51 -0.6 115,580 - SM_b20104 0.56 +0.9 115,588 - SM_b20104 0.57 -2.1 115,900 + -0.3 115,901 - -0.5 115,983 + -0.9 115,983 + -1.3 115,984 - -0.1 115,984 - -0.5 116,013 + -0.4 116,024 + -0.7 116,024 + -2.3 116,025 - -0.5 116,025 - +2.9 116,025 - +0.5 116,025 - +0.7
Or see this region's nucleotide sequence