Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20098

Experiment: LB, pH6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20097 and SM_b20098 are separated by 8 nucleotidesSM_b20098 and SM_b20099 overlap by 4 nucleotides SM_b20097: SM_b20097 - oxidoreductase, at 105,495 to 106,724 _b20097 SM_b20098: SM_b20098 - hypothetical protein, at 106,733 to 107,128 _b20098 SM_b20099: SM_b20099 - maltose alpha-D-glucosyltransferase, at 107,125 to 108,759 _b20099 Position (kb) 106 107 108Strain fitness (log2 ratio) -2 -1 0 1at 105.740 kb on - strand, within SM_b20097at 105.740 kb on - strand, within SM_b20097at 105.970 kb on + strand, within SM_b20097at 105.970 kb on + strand, within SM_b20097at 105.970 kb on + strand, within SM_b20097at 105.970 kb on + strand, within SM_b20097at 105.971 kb on - strand, within SM_b20097at 105.971 kb on - strand, within SM_b20097at 105.971 kb on - strand, within SM_b20097at 106.236 kb on + strand, within SM_b20097at 106.437 kb on + strand, within SM_b20097at 106.473 kb on + strand, within SM_b20097at 106.474 kb on - strand, within SM_b20097at 106.474 kb on - strand, within SM_b20097at 106.474 kb on - strand, within SM_b20097at 106.496 kb on - strand, within SM_b20097at 106.698 kb on + strandat 106.714 kb on + strandat 106.715 kb on - strandat 106.732 kb on + strandat 106.909 kb on + strand, within SM_b20098at 106.911 kb on - strand, within SM_b20098at 107.021 kb on - strand, within SM_b20098at 107.041 kb on + strand, within SM_b20098at 107.161 kb on + strandat 107.161 kb on + strandat 107.161 kb on + strandat 107.162 kb on - strandat 107.162 kb on - strandat 107.219 kb on + strandat 107.219 kb on + strandat 107.220 kb on - strandat 107.220 kb on - strandat 107.242 kb on + strandat 107.242 kb on + strandat 107.242 kb on + strandat 107.243 kb on - strandat 107.251 kb on + strandat 107.251 kb on + strandat 107.252 kb on - strandat 107.329 kb on + strand, within SM_b20099at 107.330 kb on - strand, within SM_b20099at 107.330 kb on - strand, within SM_b20099at 107.332 kb on + strand, within SM_b20099at 107.332 kb on + strand, within SM_b20099at 107.501 kb on - strand, within SM_b20099at 107.503 kb on + strand, within SM_b20099at 107.584 kb on + strand, within SM_b20099at 107.585 kb on - strand, within SM_b20099at 107.605 kb on + strand, within SM_b20099at 107.608 kb on + strand, within SM_b20099at 107.609 kb on - strand, within SM_b20099at 107.609 kb on - strand, within SM_b20099at 107.745 kb on - strand, within SM_b20099at 107.745 kb on - strand, within SM_b20099at 107.762 kb on + strand, within SM_b20099at 107.763 kb on - strand, within SM_b20099

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
remove
105,740 - SM_b20097 0.20 -1.5
105,740 - SM_b20097 0.20 -0.3
105,970 + SM_b20097 0.39 -1.0
105,970 + SM_b20097 0.39 -0.5
105,970 + SM_b20097 0.39 -1.4
105,970 + SM_b20097 0.39 -0.2
105,971 - SM_b20097 0.39 -0.6
105,971 - SM_b20097 0.39 +0.9
105,971 - SM_b20097 0.39 -0.5
106,236 + SM_b20097 0.60 +0.3
106,437 + SM_b20097 0.77 +1.2
106,473 + SM_b20097 0.80 +0.2
106,474 - SM_b20097 0.80 +0.1
106,474 - SM_b20097 0.80 -1.0
106,474 - SM_b20097 0.80 -1.3
106,496 - SM_b20097 0.81 -0.1
106,698 + -0.3
106,714 + +0.3
106,715 - -1.9
106,732 + -0.8
106,909 + SM_b20098 0.44 -0.8
106,911 - SM_b20098 0.45 -1.3
107,021 - SM_b20098 0.73 -1.1
107,041 + SM_b20098 0.78 -0.2
107,161 + +0.1
107,161 + +1.3
107,161 + +0.0
107,162 - -0.0
107,162 - -0.4
107,219 + -0.4
107,219 + -0.8
107,220 - -0.9
107,220 - -0.3
107,242 + -0.8
107,242 + -0.1
107,242 + -0.5
107,243 - -0.7
107,251 + +0.7
107,251 + -0.8
107,252 - -0.7
107,329 + SM_b20099 0.12 +0.3
107,330 - SM_b20099 0.13 -0.4
107,330 - SM_b20099 0.13 -1.2
107,332 + SM_b20099 0.13 +0.6
107,332 + SM_b20099 0.13 -0.5
107,501 - SM_b20099 0.23 -0.7
107,503 + SM_b20099 0.23 -0.4
107,584 + SM_b20099 0.28 +0.9
107,585 - SM_b20099 0.28 +0.4
107,605 + SM_b20099 0.29 -0.3
107,608 + SM_b20099 0.30 +1.3
107,609 - SM_b20099 0.30 -0.7
107,609 - SM_b20099 0.30 +0.4
107,745 - SM_b20099 0.38 -0.6
107,745 - SM_b20099 0.38 -0.4
107,762 + SM_b20099 0.39 +0.4
107,763 - SM_b20099 0.39 +0.4

Or see this region's nucleotide sequence