Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20097 and SM_b20098 are separated by 8 nucleotides SM_b20098 and SM_b20099 overlap by 4 nucleotides
SM_b20097: SM_b20097 - oxidoreductase, at 105,495 to 106,724
_b20097
SM_b20098: SM_b20098 - hypothetical protein, at 106,733 to 107,128
_b20098
SM_b20099: SM_b20099 - maltose alpha-D-glucosyltransferase, at 107,125 to 108,759
_b20099
Position (kb)
106
107
108 Strain fitness (log2 ratio)
-2
-1
0
1 at 105.740 kb on - strand, within SM_b20097 at 105.740 kb on - strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.971 kb on - strand, within SM_b20097 at 105.971 kb on - strand, within SM_b20097 at 105.971 kb on - strand, within SM_b20097 at 106.236 kb on + strand, within SM_b20097 at 106.437 kb on + strand, within SM_b20097 at 106.473 kb on + strand, within SM_b20097 at 106.474 kb on - strand, within SM_b20097 at 106.474 kb on - strand, within SM_b20097 at 106.474 kb on - strand, within SM_b20097 at 106.496 kb on - strand, within SM_b20097 at 106.698 kb on + strand at 106.714 kb on + strand at 106.715 kb on - strand at 106.732 kb on + strand at 106.909 kb on + strand, within SM_b20098 at 106.911 kb on - strand, within SM_b20098 at 107.021 kb on - strand, within SM_b20098 at 107.041 kb on + strand, within SM_b20098 at 107.161 kb on + strand at 107.161 kb on + strand at 107.161 kb on + strand at 107.162 kb on - strand at 107.162 kb on - strand at 107.219 kb on + strand at 107.219 kb on + strand at 107.220 kb on - strand at 107.220 kb on - strand at 107.242 kb on + strand at 107.242 kb on + strand at 107.242 kb on + strand at 107.243 kb on - strand at 107.251 kb on + strand at 107.251 kb on + strand at 107.252 kb on - strand at 107.329 kb on + strand, within SM_b20099 at 107.330 kb on - strand, within SM_b20099 at 107.330 kb on - strand, within SM_b20099 at 107.332 kb on + strand, within SM_b20099 at 107.332 kb on + strand, within SM_b20099 at 107.501 kb on - strand, within SM_b20099 at 107.503 kb on + strand, within SM_b20099 at 107.584 kb on + strand, within SM_b20099 at 107.585 kb on - strand, within SM_b20099 at 107.605 kb on + strand, within SM_b20099 at 107.608 kb on + strand, within SM_b20099 at 107.609 kb on - strand, within SM_b20099 at 107.609 kb on - strand, within SM_b20099 at 107.745 kb on - strand, within SM_b20099 at 107.745 kb on - strand, within SM_b20099 at 107.762 kb on + strand, within SM_b20099 at 107.763 kb on - strand, within SM_b20099
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 105,740 - SM_b20097 0.20 -1.5 105,740 - SM_b20097 0.20 -0.3 105,970 + SM_b20097 0.39 -1.0 105,970 + SM_b20097 0.39 -0.5 105,970 + SM_b20097 0.39 -1.4 105,970 + SM_b20097 0.39 -0.2 105,971 - SM_b20097 0.39 -0.6 105,971 - SM_b20097 0.39 +0.9 105,971 - SM_b20097 0.39 -0.5 106,236 + SM_b20097 0.60 +0.3 106,437 + SM_b20097 0.77 +1.2 106,473 + SM_b20097 0.80 +0.2 106,474 - SM_b20097 0.80 +0.1 106,474 - SM_b20097 0.80 -1.0 106,474 - SM_b20097 0.80 -1.3 106,496 - SM_b20097 0.81 -0.1 106,698 + -0.3 106,714 + +0.3 106,715 - -1.9 106,732 + -0.8 106,909 + SM_b20098 0.44 -0.8 106,911 - SM_b20098 0.45 -1.3 107,021 - SM_b20098 0.73 -1.1 107,041 + SM_b20098 0.78 -0.2 107,161 + +0.1 107,161 + +1.3 107,161 + +0.0 107,162 - -0.0 107,162 - -0.4 107,219 + -0.4 107,219 + -0.8 107,220 - -0.9 107,220 - -0.3 107,242 + -0.8 107,242 + -0.1 107,242 + -0.5 107,243 - -0.7 107,251 + +0.7 107,251 + -0.8 107,252 - -0.7 107,329 + SM_b20099 0.12 +0.3 107,330 - SM_b20099 0.13 -0.4 107,330 - SM_b20099 0.13 -1.2 107,332 + SM_b20099 0.13 +0.6 107,332 + SM_b20099 0.13 -0.5 107,501 - SM_b20099 0.23 -0.7 107,503 + SM_b20099 0.23 -0.4 107,584 + SM_b20099 0.28 +0.9 107,585 - SM_b20099 0.28 +0.4 107,605 + SM_b20099 0.29 -0.3 107,608 + SM_b20099 0.30 +1.3 107,609 - SM_b20099 0.30 -0.7 107,609 - SM_b20099 0.30 +0.4 107,745 - SM_b20099 0.38 -0.6 107,745 - SM_b20099 0.38 -0.4 107,762 + SM_b20099 0.39 +0.4 107,763 - SM_b20099 0.39 +0.4
Or see this region's nucleotide sequence