Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11290

Experiment: LB, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11285 and BPHYT_RS11290 are separated by 19 nucleotidesBPHYT_RS11290 and BPHYT_RS11295 overlap by 1 nucleotides BPHYT_RS11285: BPHYT_RS11285 - LacI family transcription regulator, at 2,562,722 to 2,563,810 _RS11285 BPHYT_RS11290: BPHYT_RS11290 - 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) (from data), at 2,563,830 to 2,564,795 _RS11290 BPHYT_RS11295: BPHYT_RS11295 - MFS transporter, at 2,564,795 to 2,566,090 _RS11295 Position (kb) 2563 2564 2565Strain fitness (log2 ratio) -1 0 1 2at 2563.315 kb on + strand, within BPHYT_RS11285at 2563.437 kb on + strand, within BPHYT_RS11285at 2563.952 kb on + strand, within BPHYT_RS11290at 2564.288 kb on - strand, within BPHYT_RS11290at 2564.288 kb on - strand, within BPHYT_RS11290at 2564.953 kb on - strand, within BPHYT_RS11295at 2564.964 kb on + strand, within BPHYT_RS11295at 2564.965 kb on - strand, within BPHYT_RS11295at 2565.073 kb on - strand, within BPHYT_RS11295at 2565.081 kb on + strand, within BPHYT_RS11295at 2565.082 kb on - strand, within BPHYT_RS11295at 2565.082 kb on - strand, within BPHYT_RS11295at 2565.114 kb on + strand, within BPHYT_RS11295at 2565.148 kb on - strand, within BPHYT_RS11295at 2565.351 kb on + strand, within BPHYT_RS11295at 2565.352 kb on - strand, within BPHYT_RS11295at 2565.352 kb on - strand, within BPHYT_RS11295at 2565.791 kb on - strand, within BPHYT_RS11295

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
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2,563,315 + BPHYT_RS11285 0.54 -0.2
2,563,437 + BPHYT_RS11285 0.66 -0.3
2,563,952 + BPHYT_RS11290 0.13 -1.5
2,564,288 - BPHYT_RS11290 0.47 -0.5
2,564,288 - BPHYT_RS11290 0.47 -0.5
2,564,953 - BPHYT_RS11295 0.12 -0.4
2,564,964 + BPHYT_RS11295 0.13 -0.1
2,564,965 - BPHYT_RS11295 0.13 -0.4
2,565,073 - BPHYT_RS11295 0.21 -0.1
2,565,081 + BPHYT_RS11295 0.22 +0.0
2,565,082 - BPHYT_RS11295 0.22 -0.6
2,565,082 - BPHYT_RS11295 0.22 +1.9
2,565,114 + BPHYT_RS11295 0.25 +0.3
2,565,148 - BPHYT_RS11295 0.27 -0.1
2,565,351 + BPHYT_RS11295 0.43 +0.4
2,565,352 - BPHYT_RS11295 0.43 -0.3
2,565,352 - BPHYT_RS11295 0.43 +0.7
2,565,791 - BPHYT_RS11295 0.77 -0.0

Or see this region's nucleotide sequence