Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19755

Experiment: CDM1 without Threonine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Threonine
2,221,200	-		BBR_RS19750	0.58	-3.6
2,221,256	+		BBR_RS19750	0.61	-0.3
2,221,264	-		BBR_RS19750	0.61	-2.7
2,221,264	-		BBR_RS19750	0.61	-1.8
2,221,264	-		BBR_RS19750	0.61	-0.9
2,221,266	+		BBR_RS19750	0.61	-2.4
2,221,284	-		BBR_RS19750	0.62	-2.2
2,221,284	-		BBR_RS19750	0.62	-2.2
2,221,377	-		BBR_RS19750	0.66	-0.8
2,221,377	-		BBR_RS19750	0.66	-1.7
2,221,405	-		BBR_RS19750	0.67	-3.6
2,221,405	-		BBR_RS19750	0.67	-3.2
2,221,412	+		BBR_RS19750	0.68	-3.1
2,221,477	-		BBR_RS19750	0.71	-2.0
2,221,480	-		BBR_RS19750	0.71	-1.9
2,221,506	+		BBR_RS19750	0.72	-3.0
2,221,518	+		BBR_RS19750	0.72	-2.1
2,221,520	+		BBR_RS19750	0.72	-2.6
2,221,521	+		BBR_RS19750	0.72	-2.0
2,221,521	+		BBR_RS19750	0.72	-2.9
2,221,526	-		BBR_RS19750	0.73	+0.4
2,221,540	+		BBR_RS19750	0.73	-1.5
2,221,557	+		BBR_RS19750	0.74	-0.8
2,221,558	-		BBR_RS19750	0.74	-1.2
2,221,562	-		BBR_RS19750	0.74	-3.8
2,221,604	-		BBR_RS19750	0.76	-2.1
2,221,608	+		BBR_RS19750	0.76	-3.6
2,221,610	+		BBR_RS19750	0.76	-1.5
2,221,610	+		BBR_RS19750	0.76	-2.3
2,221,610	+		BBR_RS19750	0.76	-2.2
2,221,610	+		BBR_RS19750	0.76	-2.4
2,221,610	+		BBR_RS19750	0.76	-4.0
2,221,610	+		BBR_RS19750	0.76	-3.1
2,221,610	+		BBR_RS19750	0.76	-2.3
2,221,610	+		BBR_RS19750	0.76	-1.5
2,221,618	-		BBR_RS19750	0.77	-1.8
2,221,618	-		BBR_RS19750	0.77	-1.6
2,221,624	+		BBR_RS19750	0.77	-3.6
2,221,624	+		BBR_RS19750	0.77	-1.5
2,221,625	-		BBR_RS19750	0.77	-1.2
2,221,642	+		BBR_RS19750	0.78	-2.8
2,221,669	-		BBR_RS19750	0.79	-2.1
2,221,673	+		BBR_RS19750	0.79	-0.9
2,221,677	-		BBR_RS19750	0.79	-0.6
2,221,679	+		BBR_RS19750	0.79	-3.1
2,221,687	+		BBR_RS19750	0.80	-2.9
2,221,687	-		BBR_RS19750	0.80	-1.2
2,221,689	+		BBR_RS19750	0.80	-0.3
2,221,694	+		BBR_RS19750	0.80	-3.1
2,221,694	+		BBR_RS19750	0.80	-3.8
2,221,697	-		BBR_RS19750	0.80	-1.5
2,221,699	+		BBR_RS19750	0.80	-2.6
2,221,702	-		BBR_RS19750	0.80	+1.8
2,221,707	+		BBR_RS19750	0.81	-2.4
2,221,707	+		BBR_RS19750	0.81	-1.7
2,221,707	+		BBR_RS19750	0.81	-2.9
2,221,707	-		BBR_RS19750	0.81	-1.4
2,221,715	-		BBR_RS19750	0.81	-1.7
2,221,715	-		BBR_RS19750	0.81	-1.9
2,221,715	-		BBR_RS19750	0.81	-2.1
2,221,715	-		BBR_RS19750	0.81	-2.1
2,221,721	+		BBR_RS19750	0.81	-2.5
2,221,721	+		BBR_RS19750	0.81	+0.1
2,221,729	-		BBR_RS19750	0.81	-0.4
2,221,729	-		BBR_RS19750	0.81	-0.7
2,221,729	-		BBR_RS19750	0.81	-3.0
2,221,729	-		BBR_RS19750	0.81	-1.3
2,221,729	-		BBR_RS19750	0.81	-2.0
2,221,729	-		BBR_RS19750	0.81	-2.7
2,221,729	-		BBR_RS19750	0.81	-1.0
2,221,768	+		BBR_RS19750	0.83	-4.7
2,221,771	-		BBR_RS19750	0.83	-0.5
2,221,797	+		BBR_RS19750	0.84	-1.0
2,221,811	-		BBR_RS19750	0.85	-0.3
2,221,817	-		BBR_RS19750	0.85	-1.0
2,221,844	+		BBR_RS19750	0.86	-0.6
2,221,845	+		BBR_RS19750	0.87	-4.1
2,221,845	+		BBR_RS19750	0.87	-3.5
2,221,845	+		BBR_RS19750	0.87	-2.8
2,221,845	+		BBR_RS19750	0.87	-2.1
2,221,845	+		BBR_RS19750	0.87	-3.5
2,221,845	+		BBR_RS19750	0.87	-4.8
2,221,845	+		BBR_RS19750	0.87	-1.4
2,221,853	-		BBR_RS19750	0.87	+0.1
2,221,853	-		BBR_RS19750	0.87	-2.4
2,221,853	-		BBR_RS19750	0.87	-2.4
2,221,853	-		BBR_RS19750	0.87	-1.2
2,221,853	-		BBR_RS19750	0.87	-0.5
2,221,853	-		BBR_RS19750	0.87	-0.6
2,221,853	-		BBR_RS19750	0.87	-0.0
2,221,885	-		BBR_RS19750	0.88	-1.4
2,221,919	-		BBR_RS19750	0.90	-1.5
2,221,925	-				-2.4
2,221,930	-				-1.1
2,221,930	-				+0.2
2,221,930	-				-0.9
2,221,935	-				-0.7
2,221,951	+				-3.3
2,221,960	+				-2.8
2,221,966	+				-2.9
2,221,968	-				-1.1
2,222,010	-				-2.3
2,222,021	+				-1.5
2,222,028	+				-2.1
2,222,048	-				-2.3
2,222,050	+				-2.1
2,222,050	+				-1.2
2,222,058	-				-2.5
2,222,058	-				-1.1
2,222,107	-				-0.2
2,222,110	-				-1.5
2,222,131	-				-2.4
2,222,131	-				-1.8
2,222,221	+				-3.0
2,222,221	+				-3.6
2,222,221	+				-2.3
2,222,229	-				-1.2
2,222,229	-				-2.3
2,222,229	-				-0.2
2,222,229	-				-2.9
2,222,229	-				-1.3
2,222,229	-				-4.0
2,222,253	+				-3.0
2,222,253	+				-3.6
2,222,261	-				-3.2
2,222,262	-				-2.0
2,222,262	-				-2.2
2,222,293	-				+0.5
2,222,296	-				-3.0
2,222,314	-				-2.1
2,222,347	+		BBR_RS19755	0.11	-3.2
2,222,347	+		BBR_RS19755	0.11	-2.2
2,222,347	+		BBR_RS19755	0.11	-2.3
2,222,347	+		BBR_RS19755	0.11	-1.1
2,222,348	+		BBR_RS19755	0.11	-3.0
2,222,355	-		BBR_RS19755	0.11	-2.2
2,222,357	-		BBR_RS19755	0.12	-1.4
2,222,382	+		BBR_RS19755	0.13	-0.8
2,222,430	-		BBR_RS19755	0.16	+0.1
2,222,454	+		BBR_RS19755	0.18	-3.5
2,222,454	+		BBR_RS19755	0.18	-3.6
2,222,462	-		BBR_RS19755	0.19	-1.6
2,222,506	-		BBR_RS19755	0.21	-2.0
2,222,574	-		BBR_RS19755	0.26	-0.6
2,222,604	-		BBR_RS19755	0.28	-3.7
2,222,612	-		BBR_RS19755	0.28	-2.3
2,222,639	-		BBR_RS19755	0.30	-2.2
2,222,680	+		BBR_RS19755	0.33	-3.3
2,222,680	+		BBR_RS19755	0.33	-2.8
2,222,680	+		BBR_RS19755	0.33	-4.1
2,222,683	-		BBR_RS19755	0.33	-0.1
2,222,688	+		BBR_RS19755	0.33	-2.5
2,222,688	-		BBR_RS19755	0.33	-1.3
2,222,688	-		BBR_RS19755	0.33	-2.7
2,222,688	-		BBR_RS19755	0.33	-3.4
2,222,695	-		BBR_RS19755	0.34	-1.7
2,222,696	+		BBR_RS19755	0.34	-3.8
2,222,698	+		BBR_RS19755	0.34	-2.7
2,222,698	+		BBR_RS19755	0.34	-2.3
2,222,704	-		BBR_RS19755	0.34	-1.6
2,222,706	-		BBR_RS19755	0.35	-0.7
2,222,727	-		BBR_RS19755	0.36	-1.4
2,222,736	+		BBR_RS19755	0.36	-2.9
2,222,744	-		BBR_RS19755	0.37	-1.2
2,222,746	+		BBR_RS19755	0.37	-2.6
2,222,746	-		BBR_RS19755	0.37	-3.1
2,222,756	-		BBR_RS19755	0.38	-2.3
2,222,761	-		BBR_RS19755	0.38	-1.9
2,222,772	-		BBR_RS19755	0.39	-1.7
2,222,786	-		BBR_RS19755	0.40	-1.1
2,222,786	-		BBR_RS19755	0.40	-3.5
2,222,786	-		BBR_RS19755	0.40	+0.4
2,222,786	-		BBR_RS19755	0.40	-1.3
2,222,788	+		BBR_RS19755	0.40	-2.4
2,222,788	+		BBR_RS19755	0.40	-3.4
2,222,788	+		BBR_RS19755	0.40	-2.8
2,222,796	-		BBR_RS19755	0.40	-2.8
2,222,866	+		BBR_RS19755	0.45	-2.4
2,222,868	+		BBR_RS19755	0.45	-3.6
2,222,876	+		BBR_RS19755	0.46	-2.1
2,222,876	+		BBR_RS19755	0.46	-1.6
2,222,876	+		BBR_RS19755	0.46	-3.7
2,222,878	-		BBR_RS19755	0.46	-1.7
2,222,895	-		BBR_RS19755	0.47	-1.5
2,222,911	+		BBR_RS19755	0.48	-2.5
2,222,949	-		BBR_RS19755	0.50	-2.2
2,222,957	-		BBR_RS19755	0.51	-3.2
2,223,010	-		BBR_RS19755	0.54	-1.5
2,223,010	-		BBR_RS19755	0.54	-2.1
2,223,018	-		BBR_RS19755	0.55	-1.4
2,223,030	-		BBR_RS19755	0.56	-2.4
2,223,033	+		BBR_RS19755	0.56	-2.3
2,223,033	-		BBR_RS19755	0.56	-2.9
2,223,041	-		BBR_RS19755	0.56	-2.9
2,223,067	-		BBR_RS19755	0.58	-2.2
2,223,074	+		BBR_RS19755	0.59	-2.8
2,223,085	+		BBR_RS19755	0.59	-2.5
2,223,110	-		BBR_RS19755	0.61	+0.2
2,223,122	+		BBR_RS19755	0.62	-1.7
2,223,130	-		BBR_RS19755	0.62	-1.9
2,223,156	-		BBR_RS19755	0.64	+1.0
2,223,197	+		BBR_RS19755	0.67	-2.0
2,223,197	-		BBR_RS19755	0.67	-3.2
2,223,205	+		BBR_RS19755	0.67	-2.3
2,223,214	-		BBR_RS19755	0.68	-2.4
2,223,215	-		BBR_RS19755	0.68	-0.5
2,223,217	+		BBR_RS19755	0.68	-1.9
2,223,217	+		BBR_RS19755	0.68	-1.9
2,223,223	+		BBR_RS19755	0.68	-2.4
2,223,229	+		BBR_RS19755	0.69	-1.8
2,223,229	+		BBR_RS19755	0.69	-3.1
2,223,237	+		BBR_RS19755	0.69	-0.2
2,223,242	+		BBR_RS19755	0.70	-0.8
2,223,244	-		BBR_RS19755	0.70	-2.6
2,223,264	+		BBR_RS19755	0.71	-2.9
2,223,275	-		BBR_RS19755	0.72	-2.1
2,223,275	-		BBR_RS19755	0.72	-1.5
2,223,294	-		BBR_RS19755	0.73	-2.9
2,223,294	-		BBR_RS19755	0.73	-2.8
2,223,300	+		BBR_RS19755	0.73	-1.6
2,223,337	-		BBR_RS19755	0.76	-1.9
2,223,381	-		BBR_RS19755	0.79	-2.8
2,223,391	-		BBR_RS19755	0.79	-2.2
2,223,391	-		BBR_RS19755	0.79	-2.6
2,223,403	+		BBR_RS19755	0.80	-2.3
2,223,406	-		BBR_RS19755	0.80	-2.4
2,223,411	-		BBR_RS19755	0.81	-2.5
2,223,416	-		BBR_RS19755	0.81	-1.6
2,223,463	-		BBR_RS19755	0.84	-2.4
2,223,483	+		BBR_RS19755	0.85	-4.0
2,223,491	-		BBR_RS19755	0.86	-3.0
2,223,491	-		BBR_RS19755	0.86	-1.4
2,223,493	+		BBR_RS19755	0.86	-3.1
2,223,493	-		BBR_RS19755	0.86	-3.5
2,223,541	+		BBR_RS19755	0.89	-1.8
2,223,566	-				-1.5
2,223,570	-				-1.7
2,223,589	+				-3.3
2,223,694	-				-2.6
2,223,703	+				-1.0
2,223,705	-				+0.1
2,223,706	-				-1.6
2,223,718	-				-0.8
2,223,739	-				-0.4
2,223,975	-		BBR_RS19760	0.19	-3.3
2,224,101	-		BBR_RS19760	0.29	-2.4
2,224,140	-		BBR_RS19760	0.32	-3.2
2,224,140	-		BBR_RS19760	0.32	-0.8