Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16655

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS16650 and ABZR87_RS16655 are separated by 99 nucleotidesABZR87_RS16655 and ABZR87_RS16660 are separated by 170 nucleotidesABZR87_RS16660 and ABZR87_RS16665 are separated by 134 nucleotides ABZR87_RS16650: ABZR87_RS16650 - MFS transporter, at 84,716 to 85,930 _RS16650 ABZR87_RS16655: ABZR87_RS16655 - GntR family transcriptional regulator, at 86,030 to 86,866 _RS16655 ABZR87_RS16660: ABZR87_RS16660 - helix-turn-helix domain-containing protein, at 87,037 to 87,579 _RS16660 ABZR87_RS16665: ABZR87_RS16665 - GNAT family N-acetyltransferase, at 87,714 to 88,292 _RS16665 Position (kb) 86 87Strain fitness (log2 ratio) -2 -1 0 1at 85.174 kb on + strand, within ABZR87_RS16650at 85.174 kb on + strand, within ABZR87_RS16650at 85.182 kb on - strand, within ABZR87_RS16650at 85.182 kb on - strand, within ABZR87_RS16650at 85.182 kb on - strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.187 kb on + strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.188 kb on - strand, within ABZR87_RS16650at 85.308 kb on + strand, within ABZR87_RS16650at 85.308 kb on + strand, within ABZR87_RS16650at 85.309 kb on - strand, within ABZR87_RS16650at 85.309 kb on - strand, within ABZR87_RS16650at 85.684 kb on - strand, within ABZR87_RS16650at 85.684 kb on - strand, within ABZR87_RS16650at 85.818 kb on + strandat 85.818 kb on + strandat 85.818 kb on + strandat 85.819 kb on - strandat 85.819 kb on - strandat 85.943 kb on + strandat 85.944 kb on - strandat 85.944 kb on - strandat 85.944 kb on - strandat 85.977 kb on + strandat 85.978 kb on - strandat 85.978 kb on - strandat 85.978 kb on - strandat 86.010 kb on + strandat 86.010 kb on + strandat 86.102 kb on + strandat 86.102 kb on + strandat 86.102 kb on + strandat 86.102 kb on + strandat 86.102 kb on + strandat 86.102 kb on + strandat 86.102 kb on + strandat 86.102 kb on + strandat 86.103 kb on - strandat 86.103 kb on - strandat 86.103 kb on - strandat 86.103 kb on - strandat 86.103 kb on - strandat 86.172 kb on + strand, within ABZR87_RS16655at 86.173 kb on - strand, within ABZR87_RS16655at 86.194 kb on - strand, within ABZR87_RS16655at 86.286 kb on + strand, within ABZR87_RS16655at 86.286 kb on + strand, within ABZR87_RS16655at 86.286 kb on + strand, within ABZR87_RS16655at 86.286 kb on + strand, within ABZR87_RS16655at 86.287 kb on - strand, within ABZR87_RS16655at 86.287 kb on - strand, within ABZR87_RS16655at 86.710 kb on - strand, within ABZR87_RS16655at 86.710 kb on - strand, within ABZR87_RS16655at 86.829 kb on + strandat 86.829 kb on + strandat 86.829 kb on + strandat 86.829 kb on + strandat 86.829 kb on + strandat 86.829 kb on + strandat 86.830 kb on - strandat 86.830 kb on - strandat 86.830 kb on - strandat 86.830 kb on - strandat 86.830 kb on - strandat 86.830 kb on - strandat 86.830 kb on - strandat 86.830 kb on - strandat 86.830 kb on - strandat 86.830 kb on - strandat 86.830 kb on - strandat 86.830 kb on - strandat 86.842 kb on - strandat 86.842 kb on - strandat 86.842 kb on - strandat 86.842 kb on - strandat 86.842 kb on - strandat 86.842 kb on - strandat 86.850 kb on - strandat 86.942 kb on + strandat 86.942 kb on + strandat 86.942 kb on + strandat 86.943 kb on - strandat 86.943 kb on - strandat 86.972 kb on + strandat 86.972 kb on + strandat 86.972 kb on + strandat 87.025 kb on + strandat 87.026 kb on - strandat 87.026 kb on - strandat 87.026 kb on - strandat 87.039 kb on - strandat 87.057 kb on + strandat 87.058 kb on - strandat 87.096 kb on - strand, within ABZR87_RS16660at 87.096 kb on - strand, within ABZR87_RS16660at 87.231 kb on - strand, within ABZR87_RS16660at 87.231 kb on - strand, within ABZR87_RS16660at 87.333 kb on - strand, within ABZR87_RS16660at 87.356 kb on + strand, within ABZR87_RS16660at 87.356 kb on + strand, within ABZR87_RS16660at 87.357 kb on - strand, within ABZR87_RS16660at 87.357 kb on - strand, within ABZR87_RS16660at 87.590 kb on + strandat 87.590 kb on + strandat 87.590 kb on + strandat 87.590 kb on + strandat 87.590 kb on + strandat 87.590 kb on + strandat 87.590 kb on + strandat 87.590 kb on + strandat 87.590 kb on + strandat 87.591 kb on - strandat 87.591 kb on - strandat 87.591 kb on - strandat 87.683 kb on + strandat 87.683 kb on + strandat 87.683 kb on + strandat 87.683 kb on + strandat 87.684 kb on - strandat 87.720 kb on + strandat 87.720 kb on + strandat 87.720 kb on + strandat 87.720 kb on + strandat 87.720 kb on + strandat 87.720 kb on + strandat 87.720 kb on + strandat 87.720 kb on + strandat 87.720 kb on + strandat 87.720 kb on + strandat 87.721 kb on - strandat 87.721 kb on - strandat 87.721 kb on - strandat 87.721 kb on - strandat 87.721 kb on - strandat 87.721 kb on - strandat 87.721 kb on - strandat 87.721 kb on - strandat 87.721 kb on - strandat 87.721 kb on - strandat 87.861 kb on + strand, within ABZR87_RS16665

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
85,174 + ABZR87_RS16650 0.38 +0.2
85,174 + ABZR87_RS16650 0.38 +0.0
85,182 - ABZR87_RS16650 0.38 -0.3
85,182 - ABZR87_RS16650 0.38 -0.1
85,182 - ABZR87_RS16650 0.38 +0.4
85,187 + ABZR87_RS16650 0.39 +0.2
85,187 + ABZR87_RS16650 0.39 -0.5
85,187 + ABZR87_RS16650 0.39 +0.1
85,187 + ABZR87_RS16650 0.39 -0.2
85,187 + ABZR87_RS16650 0.39 -0.6
85,187 + ABZR87_RS16650 0.39 +0.0
85,187 + ABZR87_RS16650 0.39 +0.2
85,188 - ABZR87_RS16650 0.39 -0.0
85,188 - ABZR87_RS16650 0.39 -0.6
85,188 - ABZR87_RS16650 0.39 +0.1
85,188 - ABZR87_RS16650 0.39 +0.5
85,188 - ABZR87_RS16650 0.39 +0.5
85,188 - ABZR87_RS16650 0.39 -0.5
85,188 - ABZR87_RS16650 0.39 -0.9
85,188 - ABZR87_RS16650 0.39 -0.7
85,308 + ABZR87_RS16650 0.49 +0.0
85,308 + ABZR87_RS16650 0.49 +0.2
85,309 - ABZR87_RS16650 0.49 +1.4
85,309 - ABZR87_RS16650 0.49 -0.1
85,684 - ABZR87_RS16650 0.80 +0.1
85,684 - ABZR87_RS16650 0.80 -0.3
85,818 + -0.3
85,818 + +0.6
85,818 + +0.6
85,819 - -0.4
85,819 - +0.8
85,943 + +0.4
85,944 - +0.6
85,944 - +0.3
85,944 - -0.6
85,977 + -0.1
85,978 - +0.7
85,978 - -0.9
85,978 - +0.2
86,010 + -0.0
86,010 + -0.5
86,102 + +0.6
86,102 + -0.3
86,102 + +0.1
86,102 + -0.5
86,102 + +0.0
86,102 + -0.5
86,102 + -0.4
86,102 + -0.7
86,103 - -0.6
86,103 - -0.5
86,103 - -1.0
86,103 - -0.9
86,103 - -0.6
86,172 + ABZR87_RS16655 0.17 +0.4
86,173 - ABZR87_RS16655 0.17 -1.2
86,194 - ABZR87_RS16655 0.20 -0.2
86,286 + ABZR87_RS16655 0.31 -0.2
86,286 + ABZR87_RS16655 0.31 -0.4
86,286 + ABZR87_RS16655 0.31 -1.7
86,286 + ABZR87_RS16655 0.31 -0.1
86,287 - ABZR87_RS16655 0.31 -0.0
86,287 - ABZR87_RS16655 0.31 -1.0
86,710 - ABZR87_RS16655 0.81 -0.3
86,710 - ABZR87_RS16655 0.81 -0.6
86,829 + -1.0
86,829 + +0.1
86,829 + +0.4
86,829 + +0.2
86,829 + +0.3
86,829 + +1.6
86,830 - +0.4
86,830 - -2.4
86,830 - -0.5
86,830 - -1.6
86,830 - -1.5
86,830 - +0.5
86,830 - -0.6
86,830 - -0.4
86,830 - -0.3
86,830 - -1.1
86,830 - -1.4
86,830 - +0.1
86,842 - -1.0
86,842 - -0.9
86,842 - -0.0
86,842 - -0.5
86,842 - +0.4
86,842 - -0.8
86,850 - -0.6
86,942 + +0.6
86,942 + -0.7
86,942 + -1.2
86,943 - +1.4
86,943 - -0.2
86,972 + -0.4
86,972 + -0.3
86,972 + +0.8
87,025 + -0.2
87,026 - -0.3
87,026 - +0.0
87,026 - -0.2
87,039 - +0.8
87,057 + +0.4
87,058 - -0.3
87,096 - ABZR87_RS16660 0.11 -0.2
87,096 - ABZR87_RS16660 0.11 +0.4
87,231 - ABZR87_RS16660 0.36 -0.3
87,231 - ABZR87_RS16660 0.36 -0.6
87,333 - ABZR87_RS16660 0.55 +0.1
87,356 + ABZR87_RS16660 0.59 -0.1
87,356 + ABZR87_RS16660 0.59 -0.2
87,357 - ABZR87_RS16660 0.59 +1.1
87,357 - ABZR87_RS16660 0.59 -0.0
87,590 + +0.4
87,590 + +0.0
87,590 + +0.1
87,590 + -0.4
87,590 + +0.3
87,590 + -0.1
87,590 + +1.4
87,590 + -0.2
87,590 + -0.6
87,591 - +0.1
87,591 - +0.3
87,591 - +1.5
87,683 + -0.2
87,683 + +0.8
87,683 + -1.3
87,683 + -1.3
87,684 - +0.4
87,720 + -1.1
87,720 + +0.9
87,720 + +0.3
87,720 + -0.2
87,720 + +1.0
87,720 + +0.9
87,720 + +0.9
87,720 + +1.3
87,720 + +0.1
87,720 + +0.1
87,721 - -0.9
87,721 - +0.8
87,721 - -0.0
87,721 - +0.3
87,721 - +0.2
87,721 - -0.1
87,721 - -0.0
87,721 - +0.1
87,721 - -0.3
87,721 - +0.3
87,861 + ABZR87_RS16665 0.25 +0.0

Or see this region's nucleotide sequence