Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10785

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10780 and ABZR87_RS10785 overlap by 4 nucleotidesABZR87_RS10785 and ABZR87_RS10795 are separated by 278 nucleotides ABZR87_RS10780: ABZR87_RS10780 - PD-(D/E)XK nuclease family protein, at 2,280,407 to 2,283,250 _RS10780 ABZR87_RS10785: ABZR87_RS10785 - exodeoxyribonuclease V subunit beta, at 2,283,247 to 2,286,768 _RS10785 ABZR87_RS10795: ABZR87_RS10795 - DNA polymerase III subunit gamma/tau, at 2,287,047 to 2,289,251 _RS10795 Position (kb) 2283 2284 2285 2286 2287Strain fitness (log2 ratio) -2 -1 0 1 2at 2282.351 kb on - strand, within ABZR87_RS10780at 2282.454 kb on - strand, within ABZR87_RS10780at 2282.454 kb on - strand, within ABZR87_RS10780at 2282.709 kb on - strand, within ABZR87_RS10780at 2282.709 kb on - strand, within ABZR87_RS10780at 2282.738 kb on + strand, within ABZR87_RS10780at 2282.806 kb on + strand, within ABZR87_RS10780at 2282.807 kb on - strand, within ABZR87_RS10780at 2282.976 kb on - strandat 2283.206 kb on + strandat 2283.206 kb on + strandat 2283.262 kb on + strandat 2283.262 kb on + strandat 2283.595 kb on + strandat 2283.802 kb on + strand, within ABZR87_RS10785at 2283.890 kb on - strand, within ABZR87_RS10785at 2284.360 kb on + strand, within ABZR87_RS10785at 2284.370 kb on - strand, within ABZR87_RS10785at 2284.480 kb on + strand, within ABZR87_RS10785at 2284.481 kb on - strand, within ABZR87_RS10785at 2284.481 kb on - strand, within ABZR87_RS10785at 2284.481 kb on - strand, within ABZR87_RS10785at 2284.755 kb on - strand, within ABZR87_RS10785at 2284.783 kb on + strand, within ABZR87_RS10785at 2284.792 kb on + strand, within ABZR87_RS10785at 2284.793 kb on - strand, within ABZR87_RS10785at 2284.943 kb on - strand, within ABZR87_RS10785at 2285.069 kb on - strand, within ABZR87_RS10785at 2285.114 kb on - strand, within ABZR87_RS10785at 2285.502 kb on - strand, within ABZR87_RS10785at 2285.502 kb on - strand, within ABZR87_RS10785at 2285.702 kb on + strand, within ABZR87_RS10785at 2285.703 kb on - strand, within ABZR87_RS10785at 2285.708 kb on + strand, within ABZR87_RS10785at 2285.717 kb on + strand, within ABZR87_RS10785at 2285.717 kb on + strand, within ABZR87_RS10785at 2285.717 kb on + strand, within ABZR87_RS10785at 2285.717 kb on + strand, within ABZR87_RS10785at 2285.717 kb on + strand, within ABZR87_RS10785at 2285.718 kb on - strand, within ABZR87_RS10785at 2285.718 kb on - strand, within ABZR87_RS10785at 2285.718 kb on - strand, within ABZR87_RS10785at 2285.718 kb on - strand, within ABZR87_RS10785at 2285.718 kb on - strand, within ABZR87_RS10785at 2285.941 kb on + strand, within ABZR87_RS10785at 2286.067 kb on + strand, within ABZR87_RS10785at 2286.068 kb on - strand, within ABZR87_RS10785at 2286.068 kb on - strand, within ABZR87_RS10785at 2286.166 kb on + strand, within ABZR87_RS10785at 2286.167 kb on - strand, within ABZR87_RS10785at 2286.481 kb on - strandat 2286.568 kb on + strandat 2286.576 kb on - strandat 2286.576 kb on - strandat 2286.576 kb on - strandat 2286.626 kb on - strandat 2286.649 kb on + strandat 2286.933 kb on + strandat 2286.933 kb on + strandat 2286.933 kb on + strandat 2286.960 kb on + strandat 2286.960 kb on + strandat 2286.961 kb on - strandat 2287.034 kb on + strandat 2287.035 kb on - strandat 2287.053 kb on + strandat 2287.053 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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2,282,351 - ABZR87_RS10780 0.68 -0.8
2,282,454 - ABZR87_RS10780 0.72 +0.0
2,282,454 - ABZR87_RS10780 0.72 +0.5
2,282,709 - ABZR87_RS10780 0.81 -1.3
2,282,709 - ABZR87_RS10780 0.81 -2.1
2,282,738 + ABZR87_RS10780 0.82 +0.0
2,282,806 + ABZR87_RS10780 0.84 +0.2
2,282,807 - ABZR87_RS10780 0.84 +2.0
2,282,976 - +2.0
2,283,206 + -0.5
2,283,206 + +0.1
2,283,262 + -0.1
2,283,262 + +0.1
2,283,595 + -1.1
2,283,802 + ABZR87_RS10785 0.16 -1.0
2,283,890 - ABZR87_RS10785 0.18 +0.0
2,284,360 + ABZR87_RS10785 0.32 -1.7
2,284,370 - ABZR87_RS10785 0.32 -0.8
2,284,480 + ABZR87_RS10785 0.35 +0.0
2,284,481 - ABZR87_RS10785 0.35 -0.8
2,284,481 - ABZR87_RS10785 0.35 +0.8
2,284,481 - ABZR87_RS10785 0.35 -1.6
2,284,755 - ABZR87_RS10785 0.43 -1.0
2,284,783 + ABZR87_RS10785 0.44 +0.7
2,284,792 + ABZR87_RS10785 0.44 +0.4
2,284,793 - ABZR87_RS10785 0.44 -1.1
2,284,943 - ABZR87_RS10785 0.48 +1.0
2,285,069 - ABZR87_RS10785 0.52 -1.0
2,285,114 - ABZR87_RS10785 0.53 -1.4
2,285,502 - ABZR87_RS10785 0.64 -1.3
2,285,502 - ABZR87_RS10785 0.64 +2.0
2,285,702 + ABZR87_RS10785 0.70 -2.0
2,285,703 - ABZR87_RS10785 0.70 +0.0
2,285,708 + ABZR87_RS10785 0.70 -0.6
2,285,717 + ABZR87_RS10785 0.70 +0.8
2,285,717 + ABZR87_RS10785 0.70 -2.6
2,285,717 + ABZR87_RS10785 0.70 +0.2
2,285,717 + ABZR87_RS10785 0.70 -1.8
2,285,717 + ABZR87_RS10785 0.70 -0.4
2,285,718 - ABZR87_RS10785 0.70 -1.3
2,285,718 - ABZR87_RS10785 0.70 -1.0
2,285,718 - ABZR87_RS10785 0.70 -1.8
2,285,718 - ABZR87_RS10785 0.70 -2.0
2,285,718 - ABZR87_RS10785 0.70 -1.1
2,285,941 + ABZR87_RS10785 0.76 -1.4
2,286,067 + ABZR87_RS10785 0.80 -1.3
2,286,068 - ABZR87_RS10785 0.80 -0.8
2,286,068 - ABZR87_RS10785 0.80 -0.6
2,286,166 + ABZR87_RS10785 0.83 +1.6
2,286,167 - ABZR87_RS10785 0.83 -1.9
2,286,481 - -0.4
2,286,568 + -0.8
2,286,576 - -0.7
2,286,576 - -0.8
2,286,576 - +0.0
2,286,626 - -1.7
2,286,649 + -1.4
2,286,933 + -0.4
2,286,933 + +0.6
2,286,933 + +0.5
2,286,960 + -1.7
2,286,960 + +0.4
2,286,961 - -0.4
2,287,034 + +0.4
2,287,035 - +0.2
2,287,053 + +0.4
2,287,053 + -0.7

Or see this region's nucleotide sequence