Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09435

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09430 and ABZR87_RS09435 are separated by 431 nucleotidesABZR87_RS09435 and ABZR87_RS09440 are separated by 128 nucleotidesABZR87_RS09440 and ABZR87_RS09445 are separated by 113 nucleotides ABZR87_RS09430: ABZR87_RS09430 - outer membrane protein OmpA, at 2,001,343 to 2,001,999 _RS09430 ABZR87_RS09435: ABZR87_RS09435 - DNA gyrase subunit A, at 2,002,431 to 2,005,100 _RS09435 ABZR87_RS09440: ABZR87_RS09440 - DUF2059 domain-containing protein, at 2,005,229 to 2,005,789 _RS09440 ABZR87_RS09445: ABZR87_RS09445 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 2,005,903 to 2,007,039 _RS09445 Position (kb) 2002 2003 2004 2005 2006Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2002.064 kb on - strandat 2002.078 kb on - strandat 2002.079 kb on + strandat 2002.079 kb on + strandat 2002.161 kb on + strandat 2002.161 kb on + strandat 2002.172 kb on + strandat 2002.172 kb on + strandat 2002.173 kb on - strandat 2002.173 kb on - strandat 2002.173 kb on - strandat 2002.174 kb on + strandat 2002.175 kb on - strandat 2002.175 kb on - strandat 2002.175 kb on - strandat 2002.213 kb on - strandat 2002.246 kb on + strandat 2002.321 kb on + strandat 2002.349 kb on - strandat 2002.361 kb on + strandat 2002.385 kb on + strandat 2002.385 kb on + strandat 2005.098 kb on + strandat 2005.098 kb on + strandat 2005.098 kb on + strandat 2005.099 kb on - strandat 2005.099 kb on - strandat 2005.099 kb on - strandat 2005.099 kb on - strandat 2005.102 kb on + strandat 2005.102 kb on + strandat 2005.102 kb on + strandat 2005.102 kb on + strandat 2005.102 kb on + strandat 2005.103 kb on - strandat 2005.103 kb on - strandat 2005.125 kb on + strandat 2005.126 kb on - strandat 2005.212 kb on - strandat 2005.584 kb on - strand, within ABZR87_RS09440at 2005.601 kb on + strand, within ABZR87_RS09440at 2005.601 kb on + strand, within ABZR87_RS09440at 2005.602 kb on - strand, within ABZR87_RS09440at 2005.602 kb on - strand, within ABZR87_RS09440at 2005.602 kb on - strand, within ABZR87_RS09440at 2005.602 kb on - strand, within ABZR87_RS09440at 2005.602 kb on - strand, within ABZR87_RS09440at 2005.604 kb on + strand, within ABZR87_RS09440at 2005.605 kb on - strand, within ABZR87_RS09440at 2005.687 kb on + strand, within ABZR87_RS09440at 2005.687 kb on + strand, within ABZR87_RS09440at 2005.687 kb on + strand, within ABZR87_RS09440at 2005.687 kb on + strand, within ABZR87_RS09440at 2005.688 kb on - strand, within ABZR87_RS09440at 2005.688 kb on - strand, within ABZR87_RS09440at 2005.721 kb on + strand, within ABZR87_RS09440at 2005.722 kb on - strand, within ABZR87_RS09440at 2005.722 kb on - strand, within ABZR87_RS09440at 2005.722 kb on - strand, within ABZR87_RS09440at 2005.722 kb on - strand, within ABZR87_RS09440at 2005.787 kb on + strandat 2005.787 kb on + strandat 2005.787 kb on + strandat 2005.787 kb on + strandat 2005.800 kb on + strandat 2005.801 kb on - strandat 2005.844 kb on + strandat 2005.845 kb on - strandat 2005.848 kb on + strandat 2005.848 kb on + strandat 2005.902 kb on + strandat 2005.903 kb on - strandat 2005.948 kb on + strandat 2005.948 kb on + strandat 2005.948 kb on + strandat 2005.949 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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2,002,064 - +0.6
2,002,078 - +1.0
2,002,079 + +0.7
2,002,079 + +1.7
2,002,161 + -1.6
2,002,161 + -0.3
2,002,172 + -1.4
2,002,172 + +0.3
2,002,173 - -0.1
2,002,173 - +0.2
2,002,173 - -1.4
2,002,174 + -0.3
2,002,175 - -0.1
2,002,175 - +2.8
2,002,175 - -0.9
2,002,213 - -0.7
2,002,246 + -0.0
2,002,321 + +0.3
2,002,349 - -1.4
2,002,361 + -0.1
2,002,385 + +0.9
2,002,385 + +1.1
2,005,098 + -0.2
2,005,098 + -0.2
2,005,098 + -0.1
2,005,099 - +1.6
2,005,099 - +0.7
2,005,099 - -0.2
2,005,099 - +0.1
2,005,102 + -0.5
2,005,102 + -0.4
2,005,102 + -0.6
2,005,102 + -0.2
2,005,102 + +0.6
2,005,103 - +0.0
2,005,103 - +0.9
2,005,125 + +0.4
2,005,126 - +0.4
2,005,212 - -0.2
2,005,584 - ABZR87_RS09440 0.63 -0.8
2,005,601 + ABZR87_RS09440 0.66 -0.6
2,005,601 + ABZR87_RS09440 0.66 -0.2
2,005,602 - ABZR87_RS09440 0.66 -0.7
2,005,602 - ABZR87_RS09440 0.66 -0.7
2,005,602 - ABZR87_RS09440 0.66 +0.6
2,005,602 - ABZR87_RS09440 0.66 -0.1
2,005,602 - ABZR87_RS09440 0.66 +1.1
2,005,604 + ABZR87_RS09440 0.67 -0.3
2,005,605 - ABZR87_RS09440 0.67 -0.9
2,005,687 + ABZR87_RS09440 0.82 +0.5
2,005,687 + ABZR87_RS09440 0.82 -0.9
2,005,687 + ABZR87_RS09440 0.82 +0.9
2,005,687 + ABZR87_RS09440 0.82 -1.8
2,005,688 - ABZR87_RS09440 0.82 -1.2
2,005,688 - ABZR87_RS09440 0.82 -1.6
2,005,721 + ABZR87_RS09440 0.88 -0.8
2,005,722 - ABZR87_RS09440 0.88 +0.7
2,005,722 - ABZR87_RS09440 0.88 +0.2
2,005,722 - ABZR87_RS09440 0.88 +1.2
2,005,722 - ABZR87_RS09440 0.88 -1.0
2,005,787 + -0.3
2,005,787 + -0.5
2,005,787 + -0.8
2,005,787 + +0.2
2,005,800 + +0.6
2,005,801 - +0.0
2,005,844 + -0.6
2,005,845 - -0.0
2,005,848 + +0.4
2,005,848 + -0.6
2,005,902 + +0.0
2,005,903 - -4.6
2,005,948 + -3.9
2,005,948 + -4.0
2,005,948 + -4.0
2,005,949 - -3.6

Or see this region's nucleotide sequence