Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07095

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS07090 and ABZR87_RS07095 are separated by 9 nucleotidesABZR87_RS07095 and ABZR87_RS07100 are separated by 39 nucleotidesABZR87_RS07100 and ABZR87_RS07105 are separated by 108 nucleotides ABZR87_RS07090: ABZR87_RS07090 - monovalent cation:proton antiporter family protein, at 1,495,915 to 1,497,894 _RS07090 ABZR87_RS07095: ABZR87_RS07095 - ribbon-helix-helix domain-containing protein, at 1,497,904 to 1,498,308 _RS07095 ABZR87_RS07100: ABZR87_RS07100 - DJ-1/PfpI family protein, at 1,498,348 to 1,498,926 _RS07100 ABZR87_RS07105: ABZR87_RS07105 - adenine phosphoribosyltransferase, at 1,499,035 to 1,499,643 _RS07105 Position (kb) 1497 1498 1499Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1497.050 kb on - strand, within ABZR87_RS07090at 1497.050 kb on - strand, within ABZR87_RS07090at 1497.050 kb on - strand, within ABZR87_RS07090at 1497.220 kb on + strand, within ABZR87_RS07090at 1497.220 kb on + strand, within ABZR87_RS07090at 1497.221 kb on - strand, within ABZR87_RS07090at 1497.286 kb on + strand, within ABZR87_RS07090at 1497.286 kb on + strand, within ABZR87_RS07090at 1497.286 kb on + strand, within ABZR87_RS07090at 1497.286 kb on + strand, within ABZR87_RS07090at 1497.287 kb on - strand, within ABZR87_RS07090at 1497.355 kb on - strand, within ABZR87_RS07090at 1497.355 kb on - strand, within ABZR87_RS07090at 1497.355 kb on - strand, within ABZR87_RS07090at 1497.355 kb on - strand, within ABZR87_RS07090at 1497.358 kb on + strand, within ABZR87_RS07090at 1497.358 kb on + strand, within ABZR87_RS07090at 1497.358 kb on + strand, within ABZR87_RS07090at 1497.358 kb on + strand, within ABZR87_RS07090at 1497.358 kb on + strand, within ABZR87_RS07090at 1497.359 kb on - strand, within ABZR87_RS07090at 1497.359 kb on - strand, within ABZR87_RS07090at 1497.359 kb on - strand, within ABZR87_RS07090at 1497.602 kb on - strand, within ABZR87_RS07090at 1497.602 kb on - strand, within ABZR87_RS07090at 1497.602 kb on - strand, within ABZR87_RS07090at 1497.619 kb on + strand, within ABZR87_RS07090at 1497.623 kb on + strand, within ABZR87_RS07090at 1497.780 kb on + strandat 1497.781 kb on - strandat 1497.781 kb on - strandat 1497.781 kb on - strandat 1497.829 kb on + strandat 1497.829 kb on - strandat 1497.905 kb on + strandat 1497.905 kb on + strandat 1497.906 kb on - strandat 1497.906 kb on - strandat 1497.906 kb on - strandat 1498.027 kb on - strand, within ABZR87_RS07095at 1498.027 kb on - strand, within ABZR87_RS07095at 1498.027 kb on - strand, within ABZR87_RS07095at 1498.064 kb on + strand, within ABZR87_RS07095at 1498.065 kb on - strand, within ABZR87_RS07095at 1498.065 kb on - strand, within ABZR87_RS07095at 1498.136 kb on + strand, within ABZR87_RS07095at 1498.136 kb on + strand, within ABZR87_RS07095at 1498.136 kb on + strand, within ABZR87_RS07095at 1498.136 kb on + strand, within ABZR87_RS07095at 1498.271 kb on + strandat 1498.271 kb on + strandat 1498.354 kb on + strandat 1498.354 kb on + strandat 1498.354 kb on + strandat 1498.354 kb on + strandat 1498.354 kb on + strandat 1498.354 kb on + strandat 1498.354 kb on - strandat 1498.355 kb on - strandat 1498.355 kb on - strandat 1498.649 kb on + strand, within ABZR87_RS07100at 1498.688 kb on + strand, within ABZR87_RS07100at 1498.688 kb on + strand, within ABZR87_RS07100at 1498.688 kb on + strand, within ABZR87_RS07100at 1498.688 kb on + strand, within ABZR87_RS07100at 1498.688 kb on + strand, within ABZR87_RS07100at 1498.688 kb on + strand, within ABZR87_RS07100at 1498.688 kb on + strand, within ABZR87_RS07100at 1498.688 kb on + strand, within ABZR87_RS07100at 1498.689 kb on - strand, within ABZR87_RS07100at 1498.689 kb on - strand, within ABZR87_RS07100at 1498.689 kb on - strand, within ABZR87_RS07100at 1498.754 kb on + strand, within ABZR87_RS07100at 1498.754 kb on + strand, within ABZR87_RS07100at 1498.754 kb on + strand, within ABZR87_RS07100at 1498.755 kb on - strand, within ABZR87_RS07100at 1498.755 kb on - strand, within ABZR87_RS07100at 1498.880 kb on + strandat 1498.880 kb on + strandat 1498.880 kb on + strandat 1498.880 kb on + strandat 1498.881 kb on - strandat 1498.881 kb on - strandat 1498.881 kb on - strandat 1498.881 kb on - strandat 1498.881 kb on - strandat 1498.941 kb on + strandat 1498.941 kb on + strandat 1498.941 kb on + strandat 1498.941 kb on + strandat 1498.941 kb on + strandat 1498.942 kb on - strandat 1498.942 kb on - strandat 1498.942 kb on - strandat 1498.990 kb on + strandat 1498.991 kb on - strandat 1498.991 kb on - strandat 1498.998 kb on + strandat 1499.119 kb on + strand, within ABZR87_RS07105at 1499.119 kb on + strand, within ABZR87_RS07105at 1499.120 kb on - strand, within ABZR87_RS07105at 1499.245 kb on + strand, within ABZR87_RS07105at 1499.246 kb on - strand, within ABZR87_RS07105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
1,497,050 - ABZR87_RS07090 0.57 +0.7
1,497,050 - ABZR87_RS07090 0.57 +0.1
1,497,050 - ABZR87_RS07090 0.57 -0.0
1,497,220 + ABZR87_RS07090 0.66 -0.8
1,497,220 + ABZR87_RS07090 0.66 +1.1
1,497,221 - ABZR87_RS07090 0.66 +1.1
1,497,286 + ABZR87_RS07090 0.69 +0.2
1,497,286 + ABZR87_RS07090 0.69 -0.1
1,497,286 + ABZR87_RS07090 0.69 -0.1
1,497,286 + ABZR87_RS07090 0.69 -0.8
1,497,287 - ABZR87_RS07090 0.69 -0.5
1,497,355 - ABZR87_RS07090 0.73 -0.4
1,497,355 - ABZR87_RS07090 0.73 -0.2
1,497,355 - ABZR87_RS07090 0.73 -1.3
1,497,355 - ABZR87_RS07090 0.73 -0.1
1,497,358 + ABZR87_RS07090 0.73 -0.3
1,497,358 + ABZR87_RS07090 0.73 +0.9
1,497,358 + ABZR87_RS07090 0.73 -0.1
1,497,358 + ABZR87_RS07090 0.73 -0.0
1,497,358 + ABZR87_RS07090 0.73 -0.2
1,497,359 - ABZR87_RS07090 0.73 +0.3
1,497,359 - ABZR87_RS07090 0.73 +0.5
1,497,359 - ABZR87_RS07090 0.73 +0.1
1,497,602 - ABZR87_RS07090 0.85 +0.0
1,497,602 - ABZR87_RS07090 0.85 +0.2
1,497,602 - ABZR87_RS07090 0.85 -0.1
1,497,619 + ABZR87_RS07090 0.86 +0.9
1,497,623 + ABZR87_RS07090 0.86 +0.2
1,497,780 + -0.0
1,497,781 - +0.2
1,497,781 - +2.1
1,497,781 - +0.3
1,497,829 + +0.3
1,497,829 - -0.3
1,497,905 + +0.4
1,497,905 + -0.3
1,497,906 - -0.3
1,497,906 - -0.8
1,497,906 - -0.2
1,498,027 - ABZR87_RS07095 0.30 -0.1
1,498,027 - ABZR87_RS07095 0.30 +0.5
1,498,027 - ABZR87_RS07095 0.30 +0.8
1,498,064 + ABZR87_RS07095 0.40 -0.3
1,498,065 - ABZR87_RS07095 0.40 -1.2
1,498,065 - ABZR87_RS07095 0.40 -3.3
1,498,136 + ABZR87_RS07095 0.57 -0.7
1,498,136 + ABZR87_RS07095 0.57 -1.2
1,498,136 + ABZR87_RS07095 0.57 -2.7
1,498,136 + ABZR87_RS07095 0.57 -1.5
1,498,271 + -2.1
1,498,271 + -0.9
1,498,354 + -0.7
1,498,354 + -1.8
1,498,354 + -1.6
1,498,354 + -0.1
1,498,354 + -1.2
1,498,354 + -1.7
1,498,354 - -1.6
1,498,355 - -1.6
1,498,355 - -0.6
1,498,649 + ABZR87_RS07100 0.52 -0.5
1,498,688 + ABZR87_RS07100 0.59 -1.3
1,498,688 + ABZR87_RS07100 0.59 -1.1
1,498,688 + ABZR87_RS07100 0.59 -2.9
1,498,688 + ABZR87_RS07100 0.59 -0.6
1,498,688 + ABZR87_RS07100 0.59 +1.3
1,498,688 + ABZR87_RS07100 0.59 -2.7
1,498,688 + ABZR87_RS07100 0.59 -3.1
1,498,688 + ABZR87_RS07100 0.59 -2.4
1,498,689 - ABZR87_RS07100 0.59 -0.9
1,498,689 - ABZR87_RS07100 0.59 -1.1
1,498,689 - ABZR87_RS07100 0.59 -2.4
1,498,754 + ABZR87_RS07100 0.70 -0.7
1,498,754 + ABZR87_RS07100 0.70 -1.5
1,498,754 + ABZR87_RS07100 0.70 -1.2
1,498,755 - ABZR87_RS07100 0.70 -0.6
1,498,755 - ABZR87_RS07100 0.70 -0.9
1,498,880 + -1.3
1,498,880 + -1.7
1,498,880 + +0.7
1,498,880 + -1.2
1,498,881 - +0.1
1,498,881 - -1.2
1,498,881 - -0.8
1,498,881 - -0.8
1,498,881 - -1.2
1,498,941 + -0.8
1,498,941 + -1.7
1,498,941 + +0.7
1,498,941 + -1.6
1,498,941 + +1.2
1,498,942 - +0.2
1,498,942 - +1.7
1,498,942 - +0.5
1,498,990 + -3.4
1,498,991 - +0.1
1,498,991 - +0.0
1,498,998 + -0.7
1,499,119 + ABZR87_RS07105 0.14 +1.0
1,499,119 + ABZR87_RS07105 0.14 +0.1
1,499,120 - ABZR87_RS07105 0.14 +0.6
1,499,245 + ABZR87_RS07105 0.34 -0.7
1,499,246 - ABZR87_RS07105 0.35 -1.7

Or see this region's nucleotide sequence