Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06855

Experiment: Glycerol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS06845 and ABZR87_RS06850 are separated by 69 nucleotidesABZR87_RS06850 and ABZR87_RS06855 are separated by 66 nucleotidesABZR87_RS06855 and ABZR87_RS06860 are separated by 199 nucleotides ABZR87_RS06845: ABZR87_RS06845 - heme o synthase, at 1,448,943 to 1,449,884 _RS06845 ABZR87_RS06850: ABZR87_RS06850 - SCO family protein, at 1,449,954 to 1,450,559 _RS06850 ABZR87_RS06855: ABZR87_RS06855 - RNA polymerase sigma factor RpoH, at 1,450,626 to 1,451,555 _RS06855 ABZR87_RS06860: ABZR87_RS06860 - diguanylate cyclase, at 1,451,755 to 1,454,673 _RS06860 Position (kb) 1450 1451 1452Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1449.627 kb on + strand, within ABZR87_RS06845at 1449.627 kb on + strand, within ABZR87_RS06845at 1449.628 kb on - strand, within ABZR87_RS06845at 1449.628 kb on - strand, within ABZR87_RS06845at 1449.670 kb on - strand, within ABZR87_RS06845at 1449.684 kb on + strand, within ABZR87_RS06845at 1449.685 kb on - strand, within ABZR87_RS06845at 1449.685 kb on - strand, within ABZR87_RS06845at 1449.686 kb on + strand, within ABZR87_RS06845at 1449.687 kb on - strand, within ABZR87_RS06845at 1449.687 kb on - strand, within ABZR87_RS06845at 1449.690 kb on + strand, within ABZR87_RS06845at 1449.690 kb on + strand, within ABZR87_RS06845at 1449.690 kb on + strand, within ABZR87_RS06845at 1449.690 kb on + strand, within ABZR87_RS06845at 1449.691 kb on - strand, within ABZR87_RS06845at 1449.691 kb on - strand, within ABZR87_RS06845at 1449.733 kb on - strand, within ABZR87_RS06845at 1449.733 kb on - strand, within ABZR87_RS06845at 1449.747 kb on + strand, within ABZR87_RS06845at 1449.748 kb on - strand, within ABZR87_RS06845at 1449.748 kb on - strand, within ABZR87_RS06845at 1449.757 kb on - strand, within ABZR87_RS06845at 1449.801 kb on + strandat 1449.801 kb on + strandat 1449.801 kb on + strandat 1449.802 kb on - strandat 1449.840 kb on + strandat 1449.840 kb on + strandat 1449.841 kb on - strandat 1449.841 kb on - strandat 1450.167 kb on + strand, within ABZR87_RS06850at 1450.167 kb on + strand, within ABZR87_RS06850at 1450.311 kb on + strand, within ABZR87_RS06850at 1450.311 kb on + strand, within ABZR87_RS06850at 1450.311 kb on + strand, within ABZR87_RS06850at 1450.311 kb on + strand, within ABZR87_RS06850at 1450.311 kb on + strand, within ABZR87_RS06850at 1450.311 kb on + strand, within ABZR87_RS06850at 1450.312 kb on - strand, within ABZR87_RS06850at 1450.312 kb on - strand, within ABZR87_RS06850at 1450.312 kb on - strand, within ABZR87_RS06850at 1450.312 kb on - strand, within ABZR87_RS06850at 1450.401 kb on + strand, within ABZR87_RS06850at 1450.401 kb on + strand, within ABZR87_RS06850at 1450.401 kb on + strand, within ABZR87_RS06850at 1450.402 kb on - strand, within ABZR87_RS06850at 1450.402 kb on - strand, within ABZR87_RS06850at 1450.402 kb on - strand, within ABZR87_RS06850at 1450.402 kb on - strand, within ABZR87_RS06850at 1450.402 kb on - strand, within ABZR87_RS06850at 1450.434 kb on + strand, within ABZR87_RS06850at 1450.434 kb on + strand, within ABZR87_RS06850at 1450.434 kb on + strand, within ABZR87_RS06850at 1450.434 kb on + strand, within ABZR87_RS06850at 1450.434 kb on + strand, within ABZR87_RS06850at 1450.435 kb on - strand, within ABZR87_RS06850at 1450.435 kb on - strand, within ABZR87_RS06850at 1450.435 kb on - strand, within ABZR87_RS06850at 1450.435 kb on - strand, within ABZR87_RS06850at 1450.435 kb on - strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.461 kb on + strand, within ABZR87_RS06850at 1450.462 kb on - strand, within ABZR87_RS06850at 1450.462 kb on - strand, within ABZR87_RS06850at 1450.462 kb on - strand, within ABZR87_RS06850at 1450.462 kb on - strand, within ABZR87_RS06850at 1450.627 kb on + strandat 1450.628 kb on - strandat 1451.149 kb on + strand, within ABZR87_RS06855at 1451.294 kb on - strand, within ABZR87_RS06855at 1451.337 kb on + strand, within ABZR87_RS06855at 1451.439 kb on - strand, within ABZR87_RS06855at 1451.441 kb on - strand, within ABZR87_RS06855at 1451.441 kb on - strand, within ABZR87_RS06855at 1451.441 kb on - strand, within ABZR87_RS06855at 1451.441 kb on - strand, within ABZR87_RS06855at 1451.441 kb on - strand, within ABZR87_RS06855at 1451.600 kb on + strandat 1451.601 kb on - strandat 1451.623 kb on + strandat 1451.623 kb on + strandat 1451.623 kb on + strandat 1451.623 kb on + strandat 1451.624 kb on - strandat 1451.624 kb on - strandat 1451.624 kb on - strandat 1451.626 kb on + strandat 1451.626 kb on + strandat 1451.626 kb on + strandat 1451.626 kb on + strandat 1451.627 kb on - strandat 1451.648 kb on + strandat 1451.680 kb on - strandat 1451.704 kb on + strandat 1451.704 kb on + strandat 1451.704 kb on + strandat 1451.705 kb on - strandat 1451.706 kb on + strandat 1451.706 kb on + strandat 1451.706 kb on + strandat 1451.707 kb on - strandat 1451.725 kb on + strandat 1451.725 kb on + strandat 1451.726 kb on - strandat 1451.726 kb on - strandat 1451.726 kb on - strandat 1451.726 kb on - strandat 1451.726 kb on - strandat 1451.770 kb on - strandat 1451.770 kb on - strandat 1451.792 kb on + strandat 1451.793 kb on - strandat 1451.793 kb on - strandat 1451.815 kb on + strandat 1451.816 kb on - strandat 1451.816 kb on - strandat 1451.816 kb on - strandat 1452.017 kb on + strandat 1452.019 kb on - strandat 1452.092 kb on + strand, within ABZR87_RS06860at 1452.092 kb on + strand, within ABZR87_RS06860at 1452.092 kb on + strand, within ABZR87_RS06860at 1452.092 kb on + strand, within ABZR87_RS06860at 1452.092 kb on + strand, within ABZR87_RS06860at 1452.093 kb on - strand, within ABZR87_RS06860at 1452.093 kb on - strand, within ABZR87_RS06860at 1452.093 kb on - strand, within ABZR87_RS06860at 1452.093 kb on - strand, within ABZR87_RS06860at 1452.131 kb on + strand, within ABZR87_RS06860at 1452.131 kb on + strand, within ABZR87_RS06860at 1452.131 kb on + strand, within ABZR87_RS06860at 1452.132 kb on - strand, within ABZR87_RS06860at 1452.132 kb on - strand, within ABZR87_RS06860at 1452.194 kb on + strand, within ABZR87_RS06860at 1452.194 kb on + strand, within ABZR87_RS06860at 1452.299 kb on + strand, within ABZR87_RS06860at 1452.299 kb on + strand, within ABZR87_RS06860at 1452.299 kb on + strand, within ABZR87_RS06860at 1452.299 kb on + strand, within ABZR87_RS06860at 1452.299 kb on + strand, within ABZR87_RS06860at 1452.300 kb on - strand, within ABZR87_RS06860at 1452.300 kb on - strand, within ABZR87_RS06860at 1452.300 kb on - strand, within ABZR87_RS06860at 1452.300 kb on - strand, within ABZR87_RS06860at 1452.300 kb on - strand, within ABZR87_RS06860at 1452.300 kb on - strand, within ABZR87_RS06860at 1452.300 kb on - strand, within ABZR87_RS06860at 1452.458 kb on + strand, within ABZR87_RS06860at 1452.458 kb on + strand, within ABZR87_RS06860at 1452.458 kb on + strand, within ABZR87_RS06860at 1452.458 kb on + strand, within ABZR87_RS06860at 1452.458 kb on + strand, within ABZR87_RS06860at 1452.476 kb on + strand, within ABZR87_RS06860at 1452.476 kb on + strand, within ABZR87_RS06860at 1452.476 kb on + strand, within ABZR87_RS06860at 1452.476 kb on + strand, within ABZR87_RS06860at 1452.476 kb on + strand, within ABZR87_RS06860at 1452.476 kb on + strand, within ABZR87_RS06860at 1452.477 kb on - strand, within ABZR87_RS06860at 1452.477 kb on - strand, within ABZR87_RS06860at 1452.477 kb on - strand, within ABZR87_RS06860at 1452.477 kb on - strand, within ABZR87_RS06860at 1452.477 kb on - strand, within ABZR87_RS06860

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
remove
1,449,627 + ABZR87_RS06845 0.73 -1.3
1,449,627 + ABZR87_RS06845 0.73 -0.9
1,449,628 - ABZR87_RS06845 0.73 -0.6
1,449,628 - ABZR87_RS06845 0.73 -0.4
1,449,670 - ABZR87_RS06845 0.77 -2.6
1,449,684 + ABZR87_RS06845 0.79 -1.8
1,449,685 - ABZR87_RS06845 0.79 +0.2
1,449,685 - ABZR87_RS06845 0.79 -1.6
1,449,686 + ABZR87_RS06845 0.79 -1.6
1,449,687 - ABZR87_RS06845 0.79 -1.3
1,449,687 - ABZR87_RS06845 0.79 -0.8
1,449,690 + ABZR87_RS06845 0.79 +0.4
1,449,690 + ABZR87_RS06845 0.79 -1.2
1,449,690 + ABZR87_RS06845 0.79 -2.2
1,449,690 + ABZR87_RS06845 0.79 -3.4
1,449,691 - ABZR87_RS06845 0.79 -0.6
1,449,691 - ABZR87_RS06845 0.79 -1.7
1,449,733 - ABZR87_RS06845 0.84 +0.1
1,449,733 - ABZR87_RS06845 0.84 -0.0
1,449,747 + ABZR87_RS06845 0.85 +0.2
1,449,748 - ABZR87_RS06845 0.85 -1.7
1,449,748 - ABZR87_RS06845 0.85 -0.0
1,449,757 - ABZR87_RS06845 0.86 -0.9
1,449,801 + -2.2
1,449,801 + -1.1
1,449,801 + -2.0
1,449,802 - -2.0
1,449,840 + -0.1
1,449,840 + -0.8
1,449,841 - +0.3
1,449,841 - -0.3
1,450,167 + ABZR87_RS06850 0.35 -0.3
1,450,167 + ABZR87_RS06850 0.35 -0.0
1,450,311 + ABZR87_RS06850 0.59 -0.9
1,450,311 + ABZR87_RS06850 0.59 +0.3
1,450,311 + ABZR87_RS06850 0.59 -0.2
1,450,311 + ABZR87_RS06850 0.59 -0.5
1,450,311 + ABZR87_RS06850 0.59 -0.4
1,450,311 + ABZR87_RS06850 0.59 -0.3
1,450,312 - ABZR87_RS06850 0.59 -0.3
1,450,312 - ABZR87_RS06850 0.59 -0.6
1,450,312 - ABZR87_RS06850 0.59 -0.1
1,450,312 - ABZR87_RS06850 0.59 -0.7
1,450,401 + ABZR87_RS06850 0.74 +0.7
1,450,401 + ABZR87_RS06850 0.74 -0.4
1,450,401 + ABZR87_RS06850 0.74 -1.3
1,450,402 - ABZR87_RS06850 0.74 +0.5
1,450,402 - ABZR87_RS06850 0.74 +1.0
1,450,402 - ABZR87_RS06850 0.74 +2.2
1,450,402 - ABZR87_RS06850 0.74 +2.0
1,450,402 - ABZR87_RS06850 0.74 +0.3
1,450,434 + ABZR87_RS06850 0.79 -1.5
1,450,434 + ABZR87_RS06850 0.79 -0.4
1,450,434 + ABZR87_RS06850 0.79 -3.0
1,450,434 + ABZR87_RS06850 0.79 +0.4
1,450,434 + ABZR87_RS06850 0.79 -0.3
1,450,435 - ABZR87_RS06850 0.79 +0.3
1,450,435 - ABZR87_RS06850 0.79 -1.1
1,450,435 - ABZR87_RS06850 0.79 -0.5
1,450,435 - ABZR87_RS06850 0.79 -0.1
1,450,435 - ABZR87_RS06850 0.79 +0.2
1,450,461 + ABZR87_RS06850 0.84 +0.1
1,450,461 + ABZR87_RS06850 0.84 +0.3
1,450,461 + ABZR87_RS06850 0.84 +0.3
1,450,461 + ABZR87_RS06850 0.84 -0.2
1,450,461 + ABZR87_RS06850 0.84 -0.1
1,450,461 + ABZR87_RS06850 0.84 +0.2
1,450,461 + ABZR87_RS06850 0.84 -0.5
1,450,461 + ABZR87_RS06850 0.84 -0.1
1,450,461 + ABZR87_RS06850 0.84 -0.2
1,450,462 - ABZR87_RS06850 0.84 -0.2
1,450,462 - ABZR87_RS06850 0.84 -0.0
1,450,462 - ABZR87_RS06850 0.84 +0.5
1,450,462 - ABZR87_RS06850 0.84 +0.1
1,450,627 + -0.1
1,450,628 - -0.0
1,451,149 + ABZR87_RS06855 0.56 +0.2
1,451,294 - ABZR87_RS06855 0.72 +0.5
1,451,337 + ABZR87_RS06855 0.76 -1.1
1,451,439 - ABZR87_RS06855 0.87 +0.9
1,451,441 - ABZR87_RS06855 0.88 -2.6
1,451,441 - ABZR87_RS06855 0.88 -0.2
1,451,441 - ABZR87_RS06855 0.88 -1.2
1,451,441 - ABZR87_RS06855 0.88 +1.9
1,451,441 - ABZR87_RS06855 0.88 +0.4
1,451,600 + +0.0
1,451,601 - +0.3
1,451,623 + -0.5
1,451,623 + -0.1
1,451,623 + +0.4
1,451,623 + +0.5
1,451,624 - +0.7
1,451,624 - +1.0
1,451,624 - -1.1
1,451,626 + -0.2
1,451,626 + +0.0
1,451,626 + +0.5
1,451,626 + +0.8
1,451,627 - +0.2
1,451,648 + +0.3
1,451,680 - +0.8
1,451,704 + -0.7
1,451,704 + +0.4
1,451,704 + -0.0
1,451,705 - +0.1
1,451,706 + -0.7
1,451,706 + +0.3
1,451,706 + -0.0
1,451,707 - -1.3
1,451,725 + -0.4
1,451,725 + +0.2
1,451,726 - +0.2
1,451,726 - +0.3
1,451,726 - +0.4
1,451,726 - +0.5
1,451,726 - +0.7
1,451,770 - +0.3
1,451,770 - -0.1
1,451,792 + +0.2
1,451,793 - -0.3
1,451,793 - -0.0
1,451,815 + -0.0
1,451,816 - -0.0
1,451,816 - -0.1
1,451,816 - +2.9
1,452,017 + -0.0
1,452,019 - -1.8
1,452,092 + ABZR87_RS06860 0.12 -0.8
1,452,092 + ABZR87_RS06860 0.12 +0.0
1,452,092 + ABZR87_RS06860 0.12 +0.7
1,452,092 + ABZR87_RS06860 0.12 -0.5
1,452,092 + ABZR87_RS06860 0.12 -0.3
1,452,093 - ABZR87_RS06860 0.12 -0.3
1,452,093 - ABZR87_RS06860 0.12 -0.7
1,452,093 - ABZR87_RS06860 0.12 -0.5
1,452,093 - ABZR87_RS06860 0.12 +0.4
1,452,131 + ABZR87_RS06860 0.13 -1.1
1,452,131 + ABZR87_RS06860 0.13 +0.6
1,452,131 + ABZR87_RS06860 0.13 -0.4
1,452,132 - ABZR87_RS06860 0.13 +1.1
1,452,132 - ABZR87_RS06860 0.13 +0.6
1,452,194 + ABZR87_RS06860 0.15 -0.0
1,452,194 + ABZR87_RS06860 0.15 -1.9
1,452,299 + ABZR87_RS06860 0.19 -1.2
1,452,299 + ABZR87_RS06860 0.19 +0.3
1,452,299 + ABZR87_RS06860 0.19 +0.4
1,452,299 + ABZR87_RS06860 0.19 -0.2
1,452,299 + ABZR87_RS06860 0.19 +0.2
1,452,300 - ABZR87_RS06860 0.19 -0.2
1,452,300 - ABZR87_RS06860 0.19 +1.2
1,452,300 - ABZR87_RS06860 0.19 +0.6
1,452,300 - ABZR87_RS06860 0.19 -1.6
1,452,300 - ABZR87_RS06860 0.19 -0.3
1,452,300 - ABZR87_RS06860 0.19 +0.3
1,452,300 - ABZR87_RS06860 0.19 +0.3
1,452,458 + ABZR87_RS06860 0.24 -0.2
1,452,458 + ABZR87_RS06860 0.24 -0.7
1,452,458 + ABZR87_RS06860 0.24 -1.4
1,452,458 + ABZR87_RS06860 0.24 -0.8
1,452,458 + ABZR87_RS06860 0.24 -0.1
1,452,476 + ABZR87_RS06860 0.25 +0.1
1,452,476 + ABZR87_RS06860 0.25 +0.1
1,452,476 + ABZR87_RS06860 0.25 +0.2
1,452,476 + ABZR87_RS06860 0.25 -0.1
1,452,476 + ABZR87_RS06860 0.25 -1.3
1,452,476 + ABZR87_RS06860 0.25 +0.7
1,452,477 - ABZR87_RS06860 0.25 +0.1
1,452,477 - ABZR87_RS06860 0.25 +0.8
1,452,477 - ABZR87_RS06860 0.25 +0.4
1,452,477 - ABZR87_RS06860 0.25 -1.4
1,452,477 - ABZR87_RS06860 0.25 +0.6

Or see this region's nucleotide sequence