Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03055

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03050 and ABZR87_RS03055 are separated by 113 nucleotidesABZR87_RS03055 and ABZR87_RS03060 are separated by 68 nucleotidesABZR87_RS03060 and ABZR87_RS03065 are separated by 191 nucleotides ABZR87_RS03050: ABZR87_RS03050 - ABC transporter substrate-binding protein, at 639,213 to 640,958 _RS03050 ABZR87_RS03055: ABZR87_RS03055 - glycerol kinase GlpK, at 641,072 to 642,568 _RS03055 ABZR87_RS03060: ABZR87_RS03060 - hypothetical protein, at 642,637 to 643,002 _RS03060 ABZR87_RS03065: ABZR87_RS03065 - DUF1415 family protein, at 643,194 to 643,820 _RS03065 Position (kb) 641 642 643Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 640.162 kb on - strand, within ABZR87_RS03050at 640.162 kb on - strand, within ABZR87_RS03050at 640.162 kb on - strand, within ABZR87_RS03050at 640.162 kb on - strand, within ABZR87_RS03050at 640.176 kb on + strand, within ABZR87_RS03050at 640.176 kb on + strand, within ABZR87_RS03050at 640.176 kb on + strand, within ABZR87_RS03050at 640.176 kb on + strand, within ABZR87_RS03050at 640.177 kb on - strand, within ABZR87_RS03050at 640.177 kb on - strand, within ABZR87_RS03050at 640.177 kb on - strand, within ABZR87_RS03050at 640.177 kb on - strand, within ABZR87_RS03050at 640.177 kb on - strand, within ABZR87_RS03050at 640.177 kb on - strand, within ABZR87_RS03050at 640.197 kb on + strand, within ABZR87_RS03050at 640.198 kb on - strand, within ABZR87_RS03050at 640.198 kb on - strand, within ABZR87_RS03050at 640.198 kb on - strand, within ABZR87_RS03050at 640.198 kb on - strand, within ABZR87_RS03050at 640.198 kb on - strand, within ABZR87_RS03050at 640.285 kb on - strand, within ABZR87_RS03050at 640.476 kb on + strand, within ABZR87_RS03050at 640.476 kb on + strand, within ABZR87_RS03050at 640.477 kb on - strand, within ABZR87_RS03050at 640.566 kb on + strand, within ABZR87_RS03050at 640.566 kb on + strand, within ABZR87_RS03050at 640.566 kb on + strand, within ABZR87_RS03050at 640.567 kb on - strand, within ABZR87_RS03050at 640.567 kb on - strand, within ABZR87_RS03050at 640.590 kb on + strand, within ABZR87_RS03050at 640.590 kb on + strand, within ABZR87_RS03050at 640.611 kb on + strand, within ABZR87_RS03050at 640.612 kb on - strand, within ABZR87_RS03050at 640.612 kb on - strand, within ABZR87_RS03050at 640.915 kb on - strandat 640.915 kb on - strandat 640.915 kb on - strandat 640.999 kb on + strandat 641.000 kb on - strandat 641.020 kb on - strandat 641.071 kb on + strandat 641.078 kb on + strandat 641.078 kb on + strandat 641.078 kb on + strandat 641.078 kb on + strandat 641.079 kb on - strandat 641.079 kb on - strandat 641.436 kb on + strand, within ABZR87_RS03055at 641.436 kb on + strand, within ABZR87_RS03055at 641.436 kb on + strand, within ABZR87_RS03055at 641.436 kb on + strand, within ABZR87_RS03055at 641.437 kb on - strand, within ABZR87_RS03055at 641.437 kb on - strand, within ABZR87_RS03055at 641.437 kb on - strand, within ABZR87_RS03055at 641.468 kb on + strand, within ABZR87_RS03055at 641.469 kb on - strand, within ABZR87_RS03055at 641.613 kb on + strand, within ABZR87_RS03055at 641.614 kb on - strand, within ABZR87_RS03055at 641.855 kb on + strand, within ABZR87_RS03055at 641.855 kb on + strand, within ABZR87_RS03055at 641.855 kb on + strand, within ABZR87_RS03055at 641.855 kb on + strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.961 kb on - strand, within ABZR87_RS03055at 641.961 kb on - strand, within ABZR87_RS03055at 642.396 kb on - strand, within ABZR87_RS03055at 642.396 kb on - strand, within ABZR87_RS03055at 642.396 kb on - strand, within ABZR87_RS03055at 642.422 kb on + strandat 642.423 kb on - strandat 642.423 kb on - strandat 642.638 kb on + strandat 642.638 kb on + strandat 642.638 kb on + strandat 642.638 kb on + strandat 642.638 kb on + strandat 642.638 kb on + strandat 642.639 kb on - strandat 642.639 kb on - strandat 642.639 kb on - strandat 642.639 kb on - strandat 642.639 kb on - strandat 642.639 kb on - strandat 642.764 kb on + strand, within ABZR87_RS03060at 642.764 kb on + strand, within ABZR87_RS03060at 642.764 kb on + strand, within ABZR87_RS03060at 642.764 kb on + strand, within ABZR87_RS03060at 642.764 kb on + strand, within ABZR87_RS03060at 642.765 kb on - strand, within ABZR87_RS03060at 642.765 kb on - strand, within ABZR87_RS03060at 642.765 kb on - strand, within ABZR87_RS03060at 642.765 kb on - strand, within ABZR87_RS03060at 642.765 kb on - strand, within ABZR87_RS03060at 642.765 kb on - strand, within ABZR87_RS03060at 642.797 kb on + strand, within ABZR87_RS03060at 642.797 kb on + strand, within ABZR87_RS03060at 642.797 kb on + strand, within ABZR87_RS03060at 642.797 kb on + strand, within ABZR87_RS03060at 642.798 kb on - strand, within ABZR87_RS03060at 642.798 kb on - strand, within ABZR87_RS03060at 642.798 kb on - strand, within ABZR87_RS03060at 643.020 kb on + strandat 643.048 kb on + strandat 643.048 kb on + strandat 643.048 kb on + strandat 643.049 kb on - strandat 643.049 kb on - strandat 643.049 kb on - strandat 643.160 kb on + strandat 643.160 kb on + strandat 643.189 kb on - strandat 643.372 kb on - strand, within ABZR87_RS03065at 643.540 kb on + strand, within ABZR87_RS03065at 643.541 kb on - strand, within ABZR87_RS03065at 643.558 kb on - strand, within ABZR87_RS03065

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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640,162 - ABZR87_RS03050 0.54 -2.2
640,162 - ABZR87_RS03050 0.54 -3.6
640,162 - ABZR87_RS03050 0.54 -4.7
640,162 - ABZR87_RS03050 0.54 -4.9
640,176 + ABZR87_RS03050 0.55 -2.3
640,176 + ABZR87_RS03050 0.55 -0.9
640,176 + ABZR87_RS03050 0.55 -2.1
640,176 + ABZR87_RS03050 0.55 -1.9
640,177 - ABZR87_RS03050 0.55 -3.8
640,177 - ABZR87_RS03050 0.55 -3.7
640,177 - ABZR87_RS03050 0.55 -3.1
640,177 - ABZR87_RS03050 0.55 -3.4
640,177 - ABZR87_RS03050 0.55 -1.7
640,177 - ABZR87_RS03050 0.55 -5.0
640,197 + ABZR87_RS03050 0.56 -1.9
640,198 - ABZR87_RS03050 0.56 -4.1
640,198 - ABZR87_RS03050 0.56 -2.8
640,198 - ABZR87_RS03050 0.56 -4.5
640,198 - ABZR87_RS03050 0.56 -3.8
640,198 - ABZR87_RS03050 0.56 -3.7
640,285 - ABZR87_RS03050 0.61 -4.6
640,476 + ABZR87_RS03050 0.72 -3.4
640,476 + ABZR87_RS03050 0.72 -1.0
640,477 - ABZR87_RS03050 0.72 -3.4
640,566 + ABZR87_RS03050 0.77 -1.2
640,566 + ABZR87_RS03050 0.77 -1.4
640,566 + ABZR87_RS03050 0.77 -0.6
640,567 - ABZR87_RS03050 0.78 -2.1
640,567 - ABZR87_RS03050 0.78 -3.3
640,590 + ABZR87_RS03050 0.79 -2.0
640,590 + ABZR87_RS03050 0.79 -1.7
640,611 + ABZR87_RS03050 0.80 +1.1
640,612 - ABZR87_RS03050 0.80 -1.9
640,612 - ABZR87_RS03050 0.80 -4.6
640,915 - -3.7
640,915 - -3.0
640,915 - -3.6
640,999 + +1.3
641,000 - -3.8
641,020 - -3.5
641,071 + -3.3
641,078 + -1.6
641,078 + -2.1
641,078 + -2.7
641,078 + -3.1
641,079 - -2.9
641,079 - -4.1
641,436 + ABZR87_RS03055 0.24 -4.5
641,436 + ABZR87_RS03055 0.24 -2.6
641,436 + ABZR87_RS03055 0.24 -3.7
641,436 + ABZR87_RS03055 0.24 -1.9
641,437 - ABZR87_RS03055 0.24 -3.1
641,437 - ABZR87_RS03055 0.24 -5.6
641,437 - ABZR87_RS03055 0.24 -2.5
641,468 + ABZR87_RS03055 0.26 -1.8
641,469 - ABZR87_RS03055 0.27 -4.1
641,613 + ABZR87_RS03055 0.36 -1.7
641,614 - ABZR87_RS03055 0.36 -2.8
641,855 + ABZR87_RS03055 0.52 -2.3
641,855 + ABZR87_RS03055 0.52 -2.8
641,855 + ABZR87_RS03055 0.52 -0.9
641,855 + ABZR87_RS03055 0.52 -3.5
641,856 - ABZR87_RS03055 0.52 -4.1
641,856 - ABZR87_RS03055 0.52 -3.7
641,856 - ABZR87_RS03055 0.52 -2.4
641,856 - ABZR87_RS03055 0.52 -2.9
641,856 - ABZR87_RS03055 0.52 -2.1
641,961 - ABZR87_RS03055 0.59 -3.4
641,961 - ABZR87_RS03055 0.59 -1.3
642,396 - ABZR87_RS03055 0.88 -3.9
642,396 - ABZR87_RS03055 0.88 -1.3
642,396 - ABZR87_RS03055 0.88 -0.4
642,422 + -4.2
642,423 - -1.8
642,423 - -1.8
642,638 + -0.1
642,638 + +0.5
642,638 + -1.1
642,638 + -0.5
642,638 + -0.7
642,638 + +0.9
642,639 - +1.1
642,639 - -1.2
642,639 - -1.1
642,639 - +0.4
642,639 - +1.1
642,639 - -0.4
642,764 + ABZR87_RS03060 0.35 -0.1
642,764 + ABZR87_RS03060 0.35 -0.0
642,764 + ABZR87_RS03060 0.35 +0.3
642,764 + ABZR87_RS03060 0.35 -1.4
642,764 + ABZR87_RS03060 0.35 -0.2
642,765 - ABZR87_RS03060 0.35 +1.1
642,765 - ABZR87_RS03060 0.35 -0.4
642,765 - ABZR87_RS03060 0.35 -0.2
642,765 - ABZR87_RS03060 0.35 -0.2
642,765 - ABZR87_RS03060 0.35 -0.4
642,765 - ABZR87_RS03060 0.35 -0.0
642,797 + ABZR87_RS03060 0.44 -0.2
642,797 + ABZR87_RS03060 0.44 +0.9
642,797 + ABZR87_RS03060 0.44 -0.2
642,797 + ABZR87_RS03060 0.44 +0.5
642,798 - ABZR87_RS03060 0.44 -1.0
642,798 - ABZR87_RS03060 0.44 -0.2
642,798 - ABZR87_RS03060 0.44 -0.8
643,020 + -0.0
643,048 + +0.1
643,048 + -0.6
643,048 + +0.4
643,049 - +1.2
643,049 - +0.4
643,049 - -0.5
643,160 + +0.4
643,160 + -0.7
643,189 - +0.2
643,372 - ABZR87_RS03065 0.28 +0.2
643,540 + ABZR87_RS03065 0.55 +0.3
643,541 - ABZR87_RS03065 0.55 -0.3
643,558 - ABZR87_RS03065 0.58 -0.0

Or see this region's nucleotide sequence