Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_001229 and ABIE53_001230 are separated by 27 nucleotides ABIE53_001230 and ABIE53_001231 are separated by 46 nucleotides ABIE53_001231 and ABIE53_001232 are separated by 36 nucleotides
ABIE53_001229: ABIE53_001229 - sulfate adenylyltransferase subunit 2, at 1,372,979 to 1,373,941
_001229
ABIE53_001230: ABIE53_001230 - sulfate adenylyltransferase subunit 1, at 1,373,969 to 1,375,285
_001230
ABIE53_001231: ABIE53_001231 - uroporphyrin-III C-methyltransferase, at 1,375,332 to 1,376,102
_001231
ABIE53_001232: ABIE53_001232 - sirohydrochlorin cobaltochelatase, at 1,376,139 to 1,376,525
_001232
Position (kb) 1373
1374
1375
1376 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1373.074 kb on + strand at 1373.074 kb on + strand at 1373.222 kb on - strand, within ABIE53_001229 at 1373.240 kb on + strand, within ABIE53_001229 at 1373.240 kb on + strand, within ABIE53_001229 at 1373.241 kb on - strand, within ABIE53_001229 at 1373.241 kb on - strand, within ABIE53_001229 at 1373.414 kb on + strand, within ABIE53_001229 at 1373.414 kb on + strand, within ABIE53_001229 at 1373.414 kb on + strand, within ABIE53_001229 at 1373.414 kb on + strand, within ABIE53_001229 at 1373.415 kb on - strand, within ABIE53_001229 at 1373.415 kb on - strand, within ABIE53_001229 at 1373.417 kb on - strand, within ABIE53_001229 at 1373.543 kb on + strand, within ABIE53_001229 at 1373.543 kb on + strand, within ABIE53_001229 at 1373.544 kb on - strand, within ABIE53_001229 at 1373.621 kb on + strand, within ABIE53_001229 at 1373.622 kb on - strand, within ABIE53_001229 at 1373.657 kb on + strand, within ABIE53_001229 at 1373.657 kb on + strand, within ABIE53_001229 at 1373.657 kb on + strand, within ABIE53_001229 at 1373.657 kb on + strand, within ABIE53_001229 at 1373.657 kb on + strand, within ABIE53_001229 at 1373.658 kb on - strand, within ABIE53_001229 at 1373.658 kb on - strand, within ABIE53_001229 at 1373.658 kb on - strand, within ABIE53_001229 at 1373.785 kb on + strand, within ABIE53_001229 at 1373.785 kb on + strand, within ABIE53_001229 at 1373.785 kb on + strand, within ABIE53_001229 at 1373.785 kb on + strand, within ABIE53_001229 at 1373.786 kb on - strand, within ABIE53_001229 at 1373.933 kb on + strand at 1373.933 kb on + strand at 1373.934 kb on - strand at 1373.939 kb on + strand at 1373.940 kb on - strand at 1373.953 kb on + strand at 1373.953 kb on + strand at 1373.953 kb on + strand at 1373.953 kb on + strand at 1373.953 kb on + strand at 1373.953 kb on + strand at 1373.953 kb on + strand at 1373.954 kb on - strand at 1373.954 kb on - strand at 1373.954 kb on - strand at 1373.957 kb on + strand at 1373.957 kb on + strand at 1373.957 kb on + strand at 1373.957 kb on + strand at 1373.957 kb on + strand at 1373.958 kb on - strand at 1373.958 kb on - strand at 1373.958 kb on - strand at 1373.958 kb on - strand at 1374.069 kb on - strand at 1374.216 kb on - strand, within ABIE53_001230 at 1374.221 kb on + strand, within ABIE53_001230 at 1374.222 kb on - strand, within ABIE53_001230 at 1374.278 kb on + strand, within ABIE53_001230 at 1374.278 kb on + strand, within ABIE53_001230 at 1374.279 kb on - strand, within ABIE53_001230 at 1374.279 kb on - strand, within ABIE53_001230 at 1374.279 kb on - strand, within ABIE53_001230 at 1374.279 kb on - strand, within ABIE53_001230 at 1374.279 kb on - strand, within ABIE53_001230 at 1374.467 kb on + strand, within ABIE53_001230 at 1374.503 kb on + strand, within ABIE53_001230 at 1374.503 kb on + strand, within ABIE53_001230 at 1374.503 kb on + strand, within ABIE53_001230 at 1374.503 kb on + strand, within ABIE53_001230 at 1374.503 kb on + strand, within ABIE53_001230 at 1374.504 kb on - strand, within ABIE53_001230 at 1374.737 kb on + strand, within ABIE53_001230 at 1374.737 kb on + strand, within ABIE53_001230 at 1374.738 kb on - strand, within ABIE53_001230 at 1374.738 kb on - strand, within ABIE53_001230 at 1374.738 kb on - strand, within ABIE53_001230 at 1374.738 kb on - strand, within ABIE53_001230 at 1374.739 kb on + strand, within ABIE53_001230 at 1374.739 kb on + strand, within ABIE53_001230 at 1374.740 kb on - strand, within ABIE53_001230 at 1374.740 kb on - strand, within ABIE53_001230 at 1374.740 kb on - strand, within ABIE53_001230 at 1374.740 kb on - strand, within ABIE53_001230 at 1375.025 kb on + strand, within ABIE53_001230 at 1375.025 kb on + strand, within ABIE53_001230 at 1375.025 kb on + strand, within ABIE53_001230 at 1375.025 kb on + strand, within ABIE53_001230 at 1375.026 kb on - strand, within ABIE53_001230 at 1375.026 kb on - strand, within ABIE53_001230 at 1375.026 kb on - strand, within ABIE53_001230 at 1375.096 kb on + strand, within ABIE53_001230 at 1375.096 kb on + strand, within ABIE53_001230 at 1375.096 kb on + strand, within ABIE53_001230 at 1375.096 kb on + strand, within ABIE53_001230 at 1375.096 kb on + strand, within ABIE53_001230 at 1375.096 kb on + strand, within ABIE53_001230 at 1375.096 kb on + strand, within ABIE53_001230 at 1375.096 kb on + strand, within ABIE53_001230 at 1375.190 kb on + strand at 1375.190 kb on + strand at 1375.190 kb on + strand at 1375.191 kb on + strand at 1375.191 kb on - strand at 1375.344 kb on + strand at 1375.345 kb on - strand at 1375.345 kb on - strand at 1375.461 kb on + strand, within ABIE53_001231 at 1375.462 kb on - strand, within ABIE53_001231 at 1375.513 kb on + strand, within ABIE53_001231 at 1375.514 kb on - strand, within ABIE53_001231 at 1375.659 kb on + strand, within ABIE53_001231 at 1375.659 kb on + strand, within ABIE53_001231 at 1375.660 kb on - strand, within ABIE53_001231 at 1375.660 kb on - strand, within ABIE53_001231 at 1375.824 kb on + strand, within ABIE53_001231 at 1375.824 kb on + strand, within ABIE53_001231 at 1375.824 kb on + strand, within ABIE53_001231 at 1375.824 kb on + strand, within ABIE53_001231 at 1375.824 kb on + strand, within ABIE53_001231 at 1375.824 kb on + strand, within ABIE53_001231 at 1375.824 kb on + strand, within ABIE53_001231 at 1375.824 kb on + strand, within ABIE53_001231 at 1375.825 kb on - strand, within ABIE53_001231 at 1375.825 kb on - strand, within ABIE53_001231 at 1375.825 kb on - strand, within ABIE53_001231 at 1375.825 kb on - strand, within ABIE53_001231 at 1375.825 kb on - strand, within ABIE53_001231 at 1375.825 kb on - strand, within ABIE53_001231 at 1375.826 kb on + strand, within ABIE53_001231 at 1375.826 kb on + strand, within ABIE53_001231 at 1375.827 kb on - strand, within ABIE53_001231 at 1375.827 kb on - strand, within ABIE53_001231 at 1376.100 kb on + strand at 1376.118 kb on - strand at 1376.118 kb on - strand at 1376.213 kb on + strand, within ABIE53_001232 at 1376.213 kb on + strand, within ABIE53_001232
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 1,373,074 + -1.0 1,373,074 + -1.4 1,373,222 - ABIE53_001229 0.25 -1.5 1,373,240 + ABIE53_001229 0.27 -1.1 1,373,240 + ABIE53_001229 0.27 -0.1 1,373,241 - ABIE53_001229 0.27 +0.6 1,373,241 - ABIE53_001229 0.27 -1.4 1,373,414 + ABIE53_001229 0.45 -1.0 1,373,414 + ABIE53_001229 0.45 -1.2 1,373,414 + ABIE53_001229 0.45 -1.6 1,373,414 + ABIE53_001229 0.45 -1.5 1,373,415 - ABIE53_001229 0.45 +0.1 1,373,415 - ABIE53_001229 0.45 -0.9 1,373,417 - ABIE53_001229 0.45 -1.6 1,373,543 + ABIE53_001229 0.59 -3.1 1,373,543 + ABIE53_001229 0.59 +0.5 1,373,544 - ABIE53_001229 0.59 -0.3 1,373,621 + ABIE53_001229 0.67 -3.0 1,373,622 - ABIE53_001229 0.67 -2.9 1,373,657 + ABIE53_001229 0.70 -1.1 1,373,657 + ABIE53_001229 0.70 +1.1 1,373,657 + ABIE53_001229 0.70 -1.7 1,373,657 + ABIE53_001229 0.70 -0.6 1,373,657 + ABIE53_001229 0.70 -3.1 1,373,658 - ABIE53_001229 0.71 +0.1 1,373,658 - ABIE53_001229 0.71 -1.6 1,373,658 - ABIE53_001229 0.71 -1.1 1,373,785 + ABIE53_001229 0.84 -0.1 1,373,785 + ABIE53_001229 0.84 -2.1 1,373,785 + ABIE53_001229 0.84 +0.1 1,373,785 + ABIE53_001229 0.84 -0.4 1,373,786 - ABIE53_001229 0.84 +0.6 1,373,933 + -0.8 1,373,933 + +1.1 1,373,934 - +0.1 1,373,939 + -0.1 1,373,940 - +1.1 1,373,953 + -0.5 1,373,953 + -0.1 1,373,953 + +0.2 1,373,953 + +0.5 1,373,953 + +0.6 1,373,953 + -1.0 1,373,953 + -0.0 1,373,954 - +0.9 1,373,954 - -0.2 1,373,954 - -0.7 1,373,957 + -0.2 1,373,957 + -0.2 1,373,957 + +0.3 1,373,957 + -1.9 1,373,957 + +0.3 1,373,958 - -0.1 1,373,958 - +0.7 1,373,958 - +2.3 1,373,958 - -0.1 1,374,069 - -1.9 1,374,216 - ABIE53_001230 0.19 -1.9 1,374,221 + ABIE53_001230 0.19 -1.9 1,374,222 - ABIE53_001230 0.19 -2.9 1,374,278 + ABIE53_001230 0.23 -2.1 1,374,278 + ABIE53_001230 0.23 -3.7 1,374,279 - ABIE53_001230 0.24 +0.5 1,374,279 - ABIE53_001230 0.24 -2.1 1,374,279 - ABIE53_001230 0.24 -0.3 1,374,279 - ABIE53_001230 0.24 +0.7 1,374,279 - ABIE53_001230 0.24 -1.7 1,374,467 + ABIE53_001230 0.38 -2.8 1,374,503 + ABIE53_001230 0.41 -1.5 1,374,503 + ABIE53_001230 0.41 -1.3 1,374,503 + ABIE53_001230 0.41 -1.1 1,374,503 + ABIE53_001230 0.41 -1.1 1,374,503 + ABIE53_001230 0.41 -1.3 1,374,504 - ABIE53_001230 0.41 -0.5 1,374,737 + ABIE53_001230 0.58 -1.6 1,374,737 + ABIE53_001230 0.58 -3.4 1,374,738 - ABIE53_001230 0.58 -0.9 1,374,738 - ABIE53_001230 0.58 -2.1 1,374,738 - ABIE53_001230 0.58 -0.1 1,374,738 - ABIE53_001230 0.58 +0.2 1,374,739 + ABIE53_001230 0.58 +0.7 1,374,739 + ABIE53_001230 0.58 -1.3 1,374,740 - ABIE53_001230 0.59 -0.5 1,374,740 - ABIE53_001230 0.59 +0.2 1,374,740 - ABIE53_001230 0.59 -0.7 1,374,740 - ABIE53_001230 0.59 -1.8 1,375,025 + ABIE53_001230 0.80 -3.6 1,375,025 + ABIE53_001230 0.80 -1.2 1,375,025 + ABIE53_001230 0.80 -3.9 1,375,025 + ABIE53_001230 0.80 -0.9 1,375,026 - ABIE53_001230 0.80 -1.7 1,375,026 - ABIE53_001230 0.80 -1.3 1,375,026 - ABIE53_001230 0.80 -1.6 1,375,096 + ABIE53_001230 0.86 +0.1 1,375,096 + ABIE53_001230 0.86 +0.5 1,375,096 + ABIE53_001230 0.86 -1.5 1,375,096 + ABIE53_001230 0.86 -1.0 1,375,096 + ABIE53_001230 0.86 +2.1 1,375,096 + ABIE53_001230 0.86 -2.7 1,375,096 + ABIE53_001230 0.86 -1.2 1,375,096 + ABIE53_001230 0.86 -0.6 1,375,190 + -1.2 1,375,190 + +1.1 1,375,190 + -0.4 1,375,191 + -0.5 1,375,191 - -2.6 1,375,344 + -0.3 1,375,345 - +0.5 1,375,345 - -1.5 1,375,461 + ABIE53_001231 0.17 -1.1 1,375,462 - ABIE53_001231 0.17 +1.1 1,375,513 + ABIE53_001231 0.23 +2.1 1,375,514 - ABIE53_001231 0.24 +1.0 1,375,659 + ABIE53_001231 0.42 -0.7 1,375,659 + ABIE53_001231 0.42 +0.4 1,375,660 - ABIE53_001231 0.43 -0.6 1,375,660 - ABIE53_001231 0.43 -0.4 1,375,824 + ABIE53_001231 0.64 -0.5 1,375,824 + ABIE53_001231 0.64 +0.7 1,375,824 + ABIE53_001231 0.64 -0.4 1,375,824 + ABIE53_001231 0.64 -0.9 1,375,824 + ABIE53_001231 0.64 -1.4 1,375,824 + ABIE53_001231 0.64 -1.1 1,375,824 + ABIE53_001231 0.64 +0.6 1,375,824 + ABIE53_001231 0.64 -0.5 1,375,825 - ABIE53_001231 0.64 +0.1 1,375,825 - ABIE53_001231 0.64 -0.4 1,375,825 - ABIE53_001231 0.64 -0.3 1,375,825 - ABIE53_001231 0.64 +0.2 1,375,825 - ABIE53_001231 0.64 +0.1 1,375,825 - ABIE53_001231 0.64 +0.2 1,375,826 + ABIE53_001231 0.64 +0.4 1,375,826 + ABIE53_001231 0.64 -0.7 1,375,827 - ABIE53_001231 0.64 +1.1 1,375,827 - ABIE53_001231 0.64 -0.6 1,376,100 + +1.8 1,376,118 - +0.6 1,376,118 - +1.5 1,376,213 + ABIE53_001232 0.19 -0.8 1,376,213 + ABIE53_001232 0.19 -0.0
Or see this region's nucleotide sequence