Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02832 and SMc02833 are separated by 291 nucleotides SMc02833 and SMc02834 are separated by 120 nucleotides SMc02834 and SMc02835 are separated by 61 nucleotides
SMc02832: SMc02832 - periplasmic binding protein, at 180,139 to 181,998
SMc02832
SMc02833: SMc02833 - penicillin-insensitive murein endopeptidase, at 182,290 to 183,357
SMc02833
SMc02834: SMc02834 - methylglyoxal synthase, at 183,478 to 183,858
SMc02834
SMc02835: SMc02835 - glucokinase, at 183,920 to 184,939
SMc02835
Position (kb) 182
183
184 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 181.297 kb on - strand, within SMc02832 at 181.297 kb on - strand, within SMc02832 at 181.298 kb on + strand, within SMc02832 at 181.298 kb on + strand, within SMc02832 at 181.432 kb on - strand, within SMc02832 at 181.499 kb on + strand, within SMc02832 at 181.500 kb on - strand, within SMc02832 at 181.537 kb on - strand, within SMc02832 at 181.626 kb on + strand, within SMc02832 at 181.664 kb on + strand, within SMc02832 at 181.829 kb on + strand at 181.856 kb on + strand at 181.857 kb on - strand at 181.857 kb on - strand at 181.882 kb on - strand at 182.045 kb on - strand at 182.641 kb on - strand, within SMc02833 at 182.978 kb on - strand, within SMc02833 at 182.978 kb on - strand, within SMc02833 at 183.222 kb on + strand, within SMc02833 at 183.278 kb on + strand at 183.385 kb on + strand at 183.385 kb on + strand at 183.385 kb on + strand at 183.385 kb on + strand at 183.385 kb on + strand at 183.385 kb on + strand at 183.385 kb on + strand at 183.385 kb on + strand at 183.386 kb on - strand at 183.386 kb on - strand at 183.386 kb on - strand at 183.680 kb on + strand, within SMc02834 at 183.681 kb on - strand, within SMc02834 at 183.793 kb on + strand, within SMc02834 at 183.793 kb on + strand, within SMc02834 at 183.793 kb on + strand, within SMc02834 at 183.794 kb on - strand, within SMc02834 at 183.794 kb on - strand, within SMc02834 at 183.859 kb on + strand at 183.859 kb on + strand at 183.860 kb on - strand at 183.860 kb on - strand at 183.860 kb on - strand at 183.863 kb on + strand at 183.863 kb on + strand at 183.863 kb on + strand at 183.863 kb on + strand at 183.864 kb on - strand at 184.161 kb on + strand, within SMc02835 at 184.162 kb on - strand, within SMc02835
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 181,297 - SMc02832 0.62 +0.6 181,297 - SMc02832 0.62 +0.9 181,298 + SMc02832 0.62 -0.2 181,298 + SMc02832 0.62 +0.7 181,432 - SMc02832 0.70 -0.4 181,499 + SMc02832 0.73 +1.0 181,500 - SMc02832 0.73 +0.7 181,537 - SMc02832 0.75 -0.1 181,626 + SMc02832 0.80 -1.0 181,664 + SMc02832 0.82 +0.3 181,829 + +1.4 181,856 + +0.7 181,857 - -0.9 181,857 - -0.9 181,882 - +3.1 182,045 - -0.0 182,641 - SMc02833 0.33 -0.2 182,978 - SMc02833 0.64 -1.2 182,978 - SMc02833 0.64 +0.1 183,222 + SMc02833 0.87 -0.6 183,278 + -0.9 183,385 + -0.4 183,385 + +0.3 183,385 + -0.1 183,385 + -1.3 183,385 + +0.6 183,385 + +0.9 183,385 + -0.1 183,385 + -0.6 183,386 - +0.4 183,386 - +0.8 183,386 - -1.2 183,680 + SMc02834 0.53 +0.6 183,681 - SMc02834 0.53 +0.1 183,793 + SMc02834 0.83 +0.3 183,793 + SMc02834 0.83 +1.0 183,793 + SMc02834 0.83 +0.7 183,794 - SMc02834 0.83 +0.4 183,794 - SMc02834 0.83 -0.7 183,859 + +0.9 183,859 + -0.3 183,860 - -0.8 183,860 - -2.5 183,860 - -0.5 183,863 + -1.0 183,863 + +0.2 183,863 + -0.0 183,863 + +0.4 183,864 - -0.4 184,161 + SMc02835 0.24 +1.7 184,162 - SMc02835 0.24 +0.1
Or see this region's nucleotide sequence