Strain Fitness in Sinorhizobium meliloti 1021 around SMc02783

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02785 and SMc02784 overlap by 8 nucleotidesSMc02784 and SMc02783 overlap by 4 nucleotidesSMc02783 and SMc02782 are separated by 134 nucleotides SMc02785: SMc02785 - lytic murein transglycosylase A protein, at 6,511 to 7,629 SMc02785 SMc02784: SMc02784 - hypothetical protein, at 7,622 to 8,188 SMc02784 SMc02783: SMc02783 - hypothetical protein, at 8,185 to 8,562 SMc02783 SMc02782: SMc02782 - DNA gyrase subunit B, at 8,697 to 11,132 SMc02782 Position (kb) 8 9Strain fitness (log2 ratio) -1 0 1 2 3at 7.396 kb on + strand, within SMc02785at 7.397 kb on - strand, within SMc02785at 8.100 kb on + strand, within SMc02784at 8.108 kb on + strand, within SMc02784at 8.108 kb on + strand, within SMc02784at 8.109 kb on - strand, within SMc02784at 8.109 kb on - strand, within SMc02784at 8.150 kb on + strandat 8.279 kb on - strand, within SMc02783at 8.347 kb on + strand, within SMc02783at 8.620 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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7,396 + SMc02785 0.79 +0.3
7,397 - SMc02785 0.79 -1.0
8,100 + SMc02784 0.84 +2.8
8,108 + SMc02784 0.86 -0.2
8,108 + SMc02784 0.86 +1.9
8,109 - SMc02784 0.86 -0.1
8,109 - SMc02784 0.86 -0.3
8,150 + -0.5
8,279 - SMc02783 0.25 -0.9
8,347 + SMc02783 0.43 +0.1
8,620 + +0.4

Or see this region's nucleotide sequence