Strain Fitness in Sinorhizobium meliloti 1021 around SMc02734

Experiment: LB, pH6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02733 and SMc02734 are separated by 3 nucleotidesSMc02734 and SMc02735 are separated by 61 nucleotides SMc02733: SMc02733 - hypothetical protein, at 2,585,890 to 2,587,806 SMc02733 SMc02734: SMc02734 - hypothetical protein, at 2,587,810 to 2,588,958 SMc02734 SMc02735: SMc02735 - hypothetical protein, at 2,589,020 to 2,590,108 SMc02735 Position (kb) 2587 2588 2589Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2586.824 kb on + strand, within SMc02733at 2586.825 kb on - strand, within SMc02733at 2586.954 kb on - strand, within SMc02733at 2586.989 kb on + strand, within SMc02733at 2586.990 kb on - strand, within SMc02733at 2586.990 kb on - strand, within SMc02733at 2586.990 kb on - strand, within SMc02733at 2587.358 kb on + strand, within SMc02733at 2587.359 kb on - strand, within SMc02733at 2587.383 kb on + strand, within SMc02733at 2587.385 kb on + strand, within SMc02733at 2587.386 kb on - strand, within SMc02733at 2587.538 kb on + strand, within SMc02733at 2587.538 kb on + strand, within SMc02733at 2587.840 kb on + strandat 2587.856 kb on + strandat 2587.856 kb on + strandat 2587.857 kb on - strandat 2587.892 kb on + strandat 2587.893 kb on - strandat 2588.156 kb on + strand, within SMc02734at 2588.157 kb on - strand, within SMc02734at 2588.252 kb on + strand, within SMc02734at 2588.273 kb on - strand, within SMc02734at 2588.382 kb on + strand, within SMc02734at 2588.412 kb on + strand, within SMc02734at 2588.412 kb on + strand, within SMc02734at 2588.413 kb on - strand, within SMc02734at 2588.413 kb on - strand, within SMc02734at 2588.414 kb on + strand, within SMc02734at 2588.414 kb on + strand, within SMc02734at 2588.414 kb on + strand, within SMc02734at 2588.414 kb on + strand, within SMc02734at 2588.414 kb on + strand, within SMc02734at 2588.414 kb on + strand, within SMc02734at 2588.466 kb on - strand, within SMc02734at 2588.466 kb on - strand, within SMc02734at 2588.466 kb on - strand, within SMc02734at 2588.466 kb on - strand, within SMc02734at 2588.819 kb on + strand, within SMc02734at 2588.856 kb on - strandat 2588.925 kb on - strandat 2588.925 kb on - strandat 2589.034 kb on - strandat 2589.034 kb on - strandat 2589.046 kb on + strandat 2589.046 kb on + strandat 2589.046 kb on + strandat 2589.047 kb on - strandat 2589.047 kb on - strandat 2589.301 kb on - strand, within SMc02735at 2589.409 kb on - strand, within SMc02735at 2589.663 kb on + strand, within SMc02735at 2589.663 kb on + strand, within SMc02735at 2589.663 kb on + strand, within SMc02735at 2589.663 kb on + strand, within SMc02735at 2589.664 kb on - strand, within SMc02735at 2589.834 kb on + strand, within SMc02735at 2589.835 kb on - strand, within SMc02735

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
remove
2,586,824 + SMc02733 0.49 -0.8
2,586,825 - SMc02733 0.49 -1.0
2,586,954 - SMc02733 0.56 +0.2
2,586,989 + SMc02733 0.57 -0.9
2,586,990 - SMc02733 0.57 +0.1
2,586,990 - SMc02733 0.57 -0.2
2,586,990 - SMc02733 0.57 +0.6
2,587,358 + SMc02733 0.77 -0.4
2,587,359 - SMc02733 0.77 -0.5
2,587,383 + SMc02733 0.78 +0.6
2,587,385 + SMc02733 0.78 -0.5
2,587,386 - SMc02733 0.78 -1.5
2,587,538 + SMc02733 0.86 -0.2
2,587,538 + SMc02733 0.86 +1.1
2,587,840 + +0.3
2,587,856 + +0.3
2,587,856 + +0.2
2,587,857 - -1.1
2,587,892 + +0.1
2,587,893 - -0.9
2,588,156 + SMc02734 0.30 -0.9
2,588,157 - SMc02734 0.30 -1.6
2,588,252 + SMc02734 0.38 -2.8
2,588,273 - SMc02734 0.40 +0.5
2,588,382 + SMc02734 0.50 +0.5
2,588,412 + SMc02734 0.52 +1.3
2,588,412 + SMc02734 0.52 +0.3
2,588,413 - SMc02734 0.52 +1.0
2,588,413 - SMc02734 0.52 +0.4
2,588,414 + SMc02734 0.53 +1.2
2,588,414 + SMc02734 0.53 -2.3
2,588,414 + SMc02734 0.53 +2.2
2,588,414 + SMc02734 0.53 +0.8
2,588,414 + SMc02734 0.53 -0.3
2,588,414 + SMc02734 0.53 -0.7
2,588,466 - SMc02734 0.57 +0.6
2,588,466 - SMc02734 0.57 +0.4
2,588,466 - SMc02734 0.57 -0.7
2,588,466 - SMc02734 0.57 +0.4
2,588,819 + SMc02734 0.88 +0.0
2,588,856 - +0.2
2,588,925 - +0.9
2,588,925 - -0.1
2,589,034 - -1.9
2,589,034 - -1.3
2,589,046 + +0.3
2,589,046 + -0.8
2,589,046 + -1.2
2,589,047 - -1.1
2,589,047 - -0.4
2,589,301 - SMc02735 0.26 -2.3
2,589,409 - SMc02735 0.36 +0.3
2,589,663 + SMc02735 0.59 -1.2
2,589,663 + SMc02735 0.59 +0.6
2,589,663 + SMc02735 0.59 -0.4
2,589,663 + SMc02735 0.59 -1.1
2,589,664 - SMc02735 0.59 -0.1
2,589,834 + SMc02735 0.75 +0.1
2,589,835 - SMc02735 0.75 -0.2

Or see this region's nucleotide sequence