Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02733 and SMc02734 are separated by 3 nucleotides SMc02734 and SMc02735 are separated by 61 nucleotides
SMc02733: SMc02733 - hypothetical protein, at 2,585,890 to 2,587,806
SMc02733
SMc02734: SMc02734 - hypothetical protein, at 2,587,810 to 2,588,958
SMc02734
SMc02735: SMc02735 - hypothetical protein, at 2,589,020 to 2,590,108
SMc02735
Position (kb)
2587
2588
2589 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2586.824 kb on + strand, within SMc02733 at 2586.825 kb on - strand, within SMc02733 at 2586.954 kb on - strand, within SMc02733 at 2586.989 kb on + strand, within SMc02733 at 2586.990 kb on - strand, within SMc02733 at 2586.990 kb on - strand, within SMc02733 at 2586.990 kb on - strand, within SMc02733 at 2587.358 kb on + strand, within SMc02733 at 2587.359 kb on - strand, within SMc02733 at 2587.383 kb on + strand, within SMc02733 at 2587.385 kb on + strand, within SMc02733 at 2587.386 kb on - strand, within SMc02733 at 2587.538 kb on + strand, within SMc02733 at 2587.538 kb on + strand, within SMc02733 at 2587.840 kb on + strand at 2587.856 kb on + strand at 2587.856 kb on + strand at 2587.857 kb on - strand at 2587.892 kb on + strand at 2587.893 kb on - strand at 2588.156 kb on + strand, within SMc02734 at 2588.157 kb on - strand, within SMc02734 at 2588.252 kb on + strand, within SMc02734 at 2588.273 kb on - strand, within SMc02734 at 2588.382 kb on + strand, within SMc02734 at 2588.412 kb on + strand, within SMc02734 at 2588.412 kb on + strand, within SMc02734 at 2588.413 kb on - strand, within SMc02734 at 2588.413 kb on - strand, within SMc02734 at 2588.414 kb on + strand, within SMc02734 at 2588.414 kb on + strand, within SMc02734 at 2588.414 kb on + strand, within SMc02734 at 2588.414 kb on + strand, within SMc02734 at 2588.414 kb on + strand, within SMc02734 at 2588.414 kb on + strand, within SMc02734 at 2588.466 kb on - strand, within SMc02734 at 2588.466 kb on - strand, within SMc02734 at 2588.466 kb on - strand, within SMc02734 at 2588.466 kb on - strand, within SMc02734 at 2588.819 kb on + strand, within SMc02734 at 2588.856 kb on - strand at 2588.925 kb on - strand at 2588.925 kb on - strand at 2589.034 kb on - strand at 2589.034 kb on - strand at 2589.046 kb on + strand at 2589.046 kb on + strand at 2589.046 kb on + strand at 2589.047 kb on - strand at 2589.047 kb on - strand at 2589.301 kb on - strand, within SMc02735 at 2589.409 kb on - strand, within SMc02735 at 2589.663 kb on + strand, within SMc02735 at 2589.663 kb on + strand, within SMc02735 at 2589.663 kb on + strand, within SMc02735 at 2589.663 kb on + strand, within SMc02735 at 2589.664 kb on - strand, within SMc02735 at 2589.834 kb on + strand, within SMc02735 at 2589.835 kb on - strand, within SMc02735
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 2,586,824 + SMc02733 0.49 -0.8 2,586,825 - SMc02733 0.49 -1.0 2,586,954 - SMc02733 0.56 +0.2 2,586,989 + SMc02733 0.57 -0.9 2,586,990 - SMc02733 0.57 +0.1 2,586,990 - SMc02733 0.57 -0.2 2,586,990 - SMc02733 0.57 +0.6 2,587,358 + SMc02733 0.77 -0.4 2,587,359 - SMc02733 0.77 -0.5 2,587,383 + SMc02733 0.78 +0.6 2,587,385 + SMc02733 0.78 -0.5 2,587,386 - SMc02733 0.78 -1.5 2,587,538 + SMc02733 0.86 -0.2 2,587,538 + SMc02733 0.86 +1.1 2,587,840 + +0.3 2,587,856 + +0.3 2,587,856 + +0.2 2,587,857 - -1.1 2,587,892 + +0.1 2,587,893 - -0.9 2,588,156 + SMc02734 0.30 -0.9 2,588,157 - SMc02734 0.30 -1.6 2,588,252 + SMc02734 0.38 -2.8 2,588,273 - SMc02734 0.40 +0.5 2,588,382 + SMc02734 0.50 +0.5 2,588,412 + SMc02734 0.52 +1.3 2,588,412 + SMc02734 0.52 +0.3 2,588,413 - SMc02734 0.52 +1.0 2,588,413 - SMc02734 0.52 +0.4 2,588,414 + SMc02734 0.53 +1.2 2,588,414 + SMc02734 0.53 -2.3 2,588,414 + SMc02734 0.53 +2.2 2,588,414 + SMc02734 0.53 +0.8 2,588,414 + SMc02734 0.53 -0.3 2,588,414 + SMc02734 0.53 -0.7 2,588,466 - SMc02734 0.57 +0.6 2,588,466 - SMc02734 0.57 +0.4 2,588,466 - SMc02734 0.57 -0.7 2,588,466 - SMc02734 0.57 +0.4 2,588,819 + SMc02734 0.88 +0.0 2,588,856 - +0.2 2,588,925 - +0.9 2,588,925 - -0.1 2,589,034 - -1.9 2,589,034 - -1.3 2,589,046 + +0.3 2,589,046 + -0.8 2,589,046 + -1.2 2,589,047 - -1.1 2,589,047 - -0.4 2,589,301 - SMc02735 0.26 -2.3 2,589,409 - SMc02735 0.36 +0.3 2,589,663 + SMc02735 0.59 -1.2 2,589,663 + SMc02735 0.59 +0.6 2,589,663 + SMc02735 0.59 -0.4 2,589,663 + SMc02735 0.59 -1.1 2,589,664 - SMc02735 0.59 -0.1 2,589,834 + SMc02735 0.75 +0.1 2,589,835 - SMc02735 0.75 -0.2
Or see this region's nucleotide sequence