Strain Fitness in Sinorhizobium meliloti 1021 around SMc02714

Experiment: LB, pH6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02712 and SMc02713 are separated by 193 nucleotidesSMc02713 and SMc02714 are separated by 3 nucleotidesSMc02714 and SMc02715 are separated by 122 nucleotidesSMc02715 and SMc02716 overlap by 4 nucleotidesSMc02716 and SMc02717 are separated by 137 nucleotides SMc02712: SMc02712 - hypothetical protein, at 2,561,593 to 2,562,495 SMc02712 SMc02713: SMc02713 - RNA polymerase sigma-E factor (sigma-24) protein, at 2,562,689 to 2,563,204 SMc02713 SMc02714: SMc02714 - hypothetical protein, at 2,563,208 to 2,564,035 SMc02714 SMc02715: SMc02715 - hypothetical protein, at 2,564,158 to 2,564,586 SMc02715 SMc02716: SMc02716 - hypothetical protein, at 2,564,583 to 2,564,834 SMc02716 SMc02717: SMc02717 - 2-isopropylmalate synthase, at 2,564,972 to 2,566,681 SMc02717 Position (kb) 2563 2564 2565Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2562.879 kb on - strand, within SMc02713at 2563.002 kb on - strand, within SMc02713at 2563.228 kb on - strandat 2563.253 kb on + strandat 2563.416 kb on + strand, within SMc02714at 2564.086 kb on + strandat 2564.086 kb on + strandat 2564.087 kb on - strandat 2564.087 kb on - strandat 2564.106 kb on + strandat 2564.107 kb on - strandat 2564.159 kb on + strandat 2564.195 kb on + strandat 2564.196 kb on - strandat 2564.196 kb on - strandat 2564.196 kb on - strandat 2564.612 kb on + strand, within SMc02716at 2564.613 kb on - strand, within SMc02716at 2564.613 kb on - strand, within SMc02716at 2564.650 kb on - strand, within SMc02716at 2564.772 kb on + strand, within SMc02716at 2564.825 kb on - strandat 2564.860 kb on + strandat 2564.860 kb on + strandat 2564.861 kb on - strandat 2564.861 kb on - strandat 2564.861 kb on - strandat 2564.863 kb on - strandat 2564.888 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
remove
2,562,879 - SMc02713 0.37 +5.1
2,563,002 - SMc02713 0.61 +5.6
2,563,228 - +5.6
2,563,253 + +5.0
2,563,416 + SMc02714 0.25 +5.5
2,564,086 + -0.2
2,564,086 + -0.3
2,564,087 - +0.3
2,564,087 - +0.4
2,564,106 + +0.1
2,564,107 - +0.2
2,564,159 + -0.6
2,564,195 + -1.0
2,564,196 - +0.9
2,564,196 - -0.8
2,564,196 - +0.1
2,564,612 + SMc02716 0.12 +0.1
2,564,613 - SMc02716 0.12 -0.6
2,564,613 - SMc02716 0.12 +0.9
2,564,650 - SMc02716 0.27 +0.4
2,564,772 + SMc02716 0.75 +0.3
2,564,825 - +0.3
2,564,860 + -0.2
2,564,860 + +0.2
2,564,861 - +1.6
2,564,861 - +1.9
2,564,861 - -0.2
2,564,863 - -1.1
2,564,888 - +1.3

Or see this region's nucleotide sequence