Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02712 and SMc02713 are separated by 193 nucleotides SMc02713 and SMc02714 are separated by 3 nucleotides SMc02714 and SMc02715 are separated by 122 nucleotides SMc02715 and SMc02716 overlap by 4 nucleotides SMc02716 and SMc02717 are separated by 137 nucleotides
SMc02712: SMc02712 - hypothetical protein, at 2,561,593 to 2,562,495
SMc02712
SMc02713: SMc02713 - RNA polymerase sigma-E factor (sigma-24) protein, at 2,562,689 to 2,563,204
SMc02713
SMc02714: SMc02714 - hypothetical protein, at 2,563,208 to 2,564,035
SMc02714
SMc02715: SMc02715 - hypothetical protein, at 2,564,158 to 2,564,586
SMc02715
SMc02716: SMc02716 - hypothetical protein, at 2,564,583 to 2,564,834
SMc02716
SMc02717: SMc02717 - 2-isopropylmalate synthase, at 2,564,972 to 2,566,681
SMc02717
Position (kb)
2563
2564
2565 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 2562.879 kb on - strand, within SMc02713 at 2563.002 kb on - strand, within SMc02713 at 2563.228 kb on - strand at 2563.253 kb on + strand at 2563.416 kb on + strand, within SMc02714 at 2564.086 kb on + strand at 2564.086 kb on + strand at 2564.087 kb on - strand at 2564.087 kb on - strand at 2564.106 kb on + strand at 2564.107 kb on - strand at 2564.159 kb on + strand at 2564.195 kb on + strand at 2564.196 kb on - strand at 2564.196 kb on - strand at 2564.196 kb on - strand at 2564.612 kb on + strand, within SMc02716 at 2564.613 kb on - strand, within SMc02716 at 2564.613 kb on - strand, within SMc02716 at 2564.650 kb on - strand, within SMc02716 at 2564.772 kb on + strand, within SMc02716 at 2564.825 kb on - strand at 2564.860 kb on + strand at 2564.860 kb on + strand at 2564.861 kb on - strand at 2564.861 kb on - strand at 2564.861 kb on - strand at 2564.863 kb on - strand at 2564.888 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 2,562,879 - SMc02713 0.37 +5.1 2,563,002 - SMc02713 0.61 +5.6 2,563,228 - +5.6 2,563,253 + +5.0 2,563,416 + SMc02714 0.25 +5.5 2,564,086 + -0.2 2,564,086 + -0.3 2,564,087 - +0.3 2,564,087 - +0.4 2,564,106 + +0.1 2,564,107 - +0.2 2,564,159 + -0.6 2,564,195 + -1.0 2,564,196 - +0.9 2,564,196 - -0.8 2,564,196 - +0.1 2,564,612 + SMc02716 0.12 +0.1 2,564,613 - SMc02716 0.12 -0.6 2,564,613 - SMc02716 0.12 +0.9 2,564,650 - SMc02716 0.27 +0.4 2,564,772 + SMc02716 0.75 +0.3 2,564,825 - +0.3 2,564,860 + -0.2 2,564,860 + +0.2 2,564,861 - +1.6 2,564,861 - +1.9 2,564,861 - -0.2 2,564,863 - -1.1 2,564,888 - +1.3
Or see this region's nucleotide sequence